Creates a genomic plot of a chromosome showing the breed assigned to each fragment for one or more breed discovery experiments.
SYNOPSIS
python breedCallingPlot.py [options] file [file2] [file3]...
OPTIONS
--output <file_name>
File name of the generated plot.
Default value: 'breedCallingPlot.png'
--legend <legend>
Description of the plot.
--chromosome <chromosome_label>
Label of the plotted chromosome.
--breeds <breeds_file>
Name of a file containing the list of breeds to be plotted.
When plotting a single experiment, the breeds file can
be omited.
--colors <colors_file>
Name of a file containing the list of colors to be used
when plotting the breed calls for every experiment. If
the list of colors is shorter than the list of experiments
then colors are rotated from the beginning.
--help
Shows this help information.
FILES
List of files containing each one the calls of a breed discovery
experiment.
DEPENDENCIES
numpy
pandas
matplotlib
genomePlot
https://github.com/CarlosMorcilloSuarez/genomePlot