ncmirtools

Set of commandline tools for interaction with data hosted internally at NCMIR.

For more information please visit our wiki page:

https://github.com/CRBS/ncmirtools/wiki

Tools

• mpidir.py -- Given a Microscopy product id, this script finds the path on the filesystem
• projectdir.py -- Given a project id, this script finds the path on the filesystem
• projectsearch.py -- Allows caller to search database for projects
• mpidinfo.py -- Queries database and returns information on specific Microscopy Product
• imagetokiosk.py -- Transfers second youngest image file to remote server via scp
• ncmirtool.py -- New tool that will soon be the main entry point for all commands above. Currently offers prototype uploading of data to Cell Image Library (CIL)

Dependencies

• argparse
• configparser
• pg8000
• ftpretty
• paramiko

Compatibility

• Should work on Python 2.7, 3.3, 3.4, & 3.5 on Linux distributions

Installation

Try one of these:

pip install ncmirtools

python setup.py install

License

See LICENSE.txt

Bugs

Please report them here

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.