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PLSDB pipeline for 2024_05_31_v2 (v. 2024_05_31_v2)

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@G-Molano-LA G-Molano-LA released this 23 Oct 11:44

What is new in v. 2024_05_31_v2?

  • 12,465 new records vs 2023_11_03.
  • Enhanced data retrieval. Incorporation of Archaea kingdom and unification of Biosample attributes. Example.
  • Identical Plasmids. Preservation of biologically relevant contextual information during the removal of duplicates. Example.
  • Improved Disease and Ecosystem Classification. Expanded classifications now include environmental ecosystems (e.g., aquatic, terrestrial) and enriched information on host-associated ecosystems (e.g., Homo sapiens, gastrointestinal system, fecal). Example.
  • Plasmid Features Annotation. Comprehensive annotation of functional structures, including protein-coding genes, MOB typing, antimicrobial resistance genes, and biosynthetic gene clusters. Example.
  • Webserver redesign. To accommodate these improvements, the webserver of PLSDB has also been reconstructed, resulting in decreased response times and enhanced visualization of features while ensuring that users have access to a more efficient and user-friendly interface.