IMC_NSCLC_CAF

IMC analyis CAFs in NSCLC

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
00_merge_area-size.Rmd		00_merge_area-size.Rmd
00_prepare_clinicaldata.Rmd		00_prepare_clinicaldata.Rmd
01_Merge-sce-objects.Rmd		01_Merge-sce-objects.Rmd
02_glm_tumour-non-tumour_perTMA.Rmd		02_glm_tumour-non-tumour_perTMA.Rmd
03_Check_tumour_non-tumouor_afterGLM.Rmd		03_Check_tumour_non-tumouor_afterGLM.Rmd
04_02_cluster_Tcells.Rmd		04_02_cluster_Tcells.Rmd
04_cluster_immune-cells.Rmd		04_cluster_immune-cells.Rmd
05_cluster_stroma-cells.Rmd		05_cluster_stroma-cells.Rmd
06_cluster_vessel-cells.Rmd		06_cluster_vessel-cells.Rmd
07_cluster_CAFs.Rmd		07_cluster_CAFs.Rmd
08_merge-all-cells_post-Clustering.Rmd		08_merge-all-cells_post-Clustering.Rmd
09_cluster_tumour_cells.Rmd		09_cluster_tumour_cells.Rmd
20230821_Revisions.Rmd		20230821_Revisions.Rmd
Analysis_Distances.Rmd		Analysis_Distances.Rmd
Analysis_Fibro.Rmd		Analysis_Fibro.Rmd
Analysis_Fibro_DensitiesperStroma.Rmd		Analysis_Fibro_DensitiesperStroma.Rmd
Analysis_Immune-nonT.Rmd		Analysis_Immune-nonT.Rmd
Analysis_Immune_Tcell_category.Rmd		Analysis_Immune_Tcell_category.Rmd
Analysis_Immune_Tcell_types.Rmd		Analysis_Immune_Tcell_types.Rmd
Analysis_Immune_Types.Rmd		Analysis_Immune_Types.Rmd
Analysis_Tcells.Rmd		Analysis_Tcells.Rmd
Analysis_all_clustered_prop_den.Rmd		Analysis_all_clustered_prop_den.Rmd
Analysis_all_minus_Tumour.Rmd		Analysis_all_minus_Tumour.Rmd
Analysis_merged_by_category_T_I_C_V_patroirem.Rmd		Analysis_merged_by_category_T_I_C_V_patroirem.Rmd
Analysis_tumour.Rmd		Analysis_tumour.Rmd
Anaysis_vessel.Rmd		Anaysis_vessel.Rmd
Cytomapper_Sanity_Checks.Rmd		Cytomapper_Sanity_Checks.Rmd
Plots.Rmd		Plots.Rmd
README.md		README.md
Read_LC_NSCLC_TMA_175_A.Rmd		Read_LC_NSCLC_TMA_175_A.Rmd
Read_LC_NSCLC_TMA_175_B.Rmd		Read_LC_NSCLC_TMA_175_B.Rmd
Read_LC_NSCLC_TMA_175_C.Rmd		Read_LC_NSCLC_TMA_175_C.Rmd
Read_LC_NSCLC_TMA_176A.Rmd		Read_LC_NSCLC_TMA_176A.Rmd
Read_LC_NSCLC_TMA_176B.Rmd		Read_LC_NSCLC_TMA_176B.Rmd
Read_LC_NSCLC_TMA_176C.Rmd		Read_LC_NSCLC_TMA_176C.Rmd
Read_LC_NSCLC_TMA_178_A.Rmd		Read_LC_NSCLC_TMA_178_A.Rmd
Read_LC_NSCLC_TMA_178_B.Rmd		Read_LC_NSCLC_TMA_178_B.Rmd
Read_LC_NSCLC_TMA_178_C.Rmd		Read_LC_NSCLC_TMA_178_C.Rmd
Read_LC_NSCLC_TMA_86_A.Rmd		Read_LC_NSCLC_TMA_86_A.Rmd
Read_LC_NSCLC_TMA_86_B.Rmd		Read_LC_NSCLC_TMA_86_B.Rmd
Read_LC_NSCLC_TMA_86_C.Rmd		Read_LC_NSCLC_TMA_86_C.Rmd
Read_LC_NSCLC_TMA_87_A.Rmd		Read_LC_NSCLC_TMA_87_A.Rmd
Read_LC_NSCLC_TMA_87_B.Rmd		Read_LC_NSCLC_TMA_87_B.Rmd
Read_LC_NSCLC_TMA_87_C.Rmd		Read_LC_NSCLC_TMA_87_C.Rmd
Read_LC_NSCLC_TMA_88_A.Rmd		Read_LC_NSCLC_TMA_88_A.Rmd
Read_LC_NSCLC_TMA_88_B.Rmd		Read_LC_NSCLC_TMA_88_B.Rmd
Read_LC_NSCLC_TMA_88_C.Rmd		Read_LC_NSCLC_TMA_88_C.Rmd
combine_ROI_clinical-data.Rmd		combine_ROI_clinical-data.Rmd

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