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4 followers · 10 following

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Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: Pull Shark

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@Avans-ATLS

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BirgitRijvers/README.md
  • 🔬 Hi, I’m @BirgitRijvers, a bioinformatician from the Netherlands
  • 💻 I’m very interested in all things microbiology & bioinformatics
  • 📓 I mostly use Python, Nextflow, Bash and R
  • 🦠 I’m currently learning how to create a web-based laboratory inventory management system
  • 🤖 One of my personal future goals is to set up an advanced homelab
  • ✉️ Reach me at birgitrijvers@gmail.com

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  1. ErasmusMC-Bioinformatics/EMC-MetaMicrobes ErasmusMC-Bioinformatics/EMC-MetaMicrobes Public

    Nextflow pipeline to detect and classify microbial reads in sequencing data from human samples.

    Nextflow 3 2

  2. Avans-ATLS/GermGenie Avans-ATLS/GermGenie Public

    EMU-based 16S classification wrapper

    Python 2

  3. Cancer_Microbiome_Scripts Cancer_Microbiome_Scripts Public

    This repository contains a collection of scripts used during researching the microbiome in tumours.

    Python

  4. NanoCLUST_toolkit NanoCLUST_toolkit Public

    Small programs that enhance NanoCLUST usage and output

    Python 1

  5. NanoCLUST_runner NanoCLUST_runner Public

    Python script that runs NanoCLUST on files in a directory with only 1 command.

    Python 1

  6. MetONTIIME_extra_diversity MetONTIIME_extra_diversity Public

    Forked from MaestSi/MetONTIIME

    A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework, with extra diversity analysis included

    Nextflow 1