A minimal model of ribosome allocation between endogenous and synthetic genes within a cell. The code is developed in MATLAB and has been tested using MATLAB 2014b. The model is defined in riboalloc.m and an example of how it is used is given in riboalloc_example.m.
All code is released under the GNU GPLv3 licence and if you make use of this work in any research we ask that the following paper is cited:
Gorochowski T.E., Avcilar-Kucukgoze I., Bovenberg R.A.L., Roubos J.A., Ignatova Z. (2016) A minimal model of ribosome allocation dynamics captures trade-offs in expression between endogenous and synthetic genes. (under review)