A pipeline tailored for automatically pre-processing 2-photon imaging stacks from Igor Pro by Wavemetrics for ROI segmetnation and extraction via Suite2p's API, allowing subsequent analysis through custom Python scripts. This repository is actively in development as part of a PhD project.
Credits:
- processing_pypeline: functions to process scanM files (experimental data) with Python hosted by Euler lab and written by amchags
- Suite2p: Open-source software for registration, cell detection, spike detection, and interactive GUI hosted by MouseLand
Disclaimer: This project is a work in progress. In principle, there should be no adverse effects such as overwriting data or unrecoverable loss of data. However, this project is currently actively in development and unanticipated results are to be expected (most likely in the form of errors while running). I take no responsibility for any loss of data or otherwise adverse unexpected results. If you find any issues, please flag any them so that they can be investigated further.