ENH: Add GitHub Actions CI and update Azure Pipelines configurations #6
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| build: | |
| name: ${{ matrix.config.name }} | |
| runs-on: ${{ matrix.config.os }} | |
| timeout-minutes: 360 # Added timeout | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { | |
| name: "Ubuntu Latest GCC", | |
| os: ubuntu-latest, | |
| cc: "gcc", | |
| cxx: "g++", | |
| parallel: "$(nproc)" | |
| } | |
| - { | |
| name: "macOS Latest Clang", | |
| os: macos-latest, | |
| cc: "clang", | |
| cxx: "clang++", | |
| parallel: "$(sysctl -n hw.ncpu)" | |
| } | |
| # - { | |
| # name: "Windows Latest MSVC", | |
| # os: windows-latest, | |
| # cc: "cl", | |
| # cxx: "cl", | |
| # parallel: "$env:NUMBER_OF_PROCESSORS" | |
| # } | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.12' | |
| - name: Install Dependencies (Ubuntu) | |
| if: matrix.config.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y ninja-build | |
| - name: Install Dependencies (macOS) | |
| if: matrix.config.os == 'macos-latest' | |
| run: | | |
| brew install ninja | |
| - name: Install Dependencies (Windows) | |
| if: matrix.config.os == 'windows-latest' | |
| run: | | |
| choco install ninja | |
| - name: Configure CMake | |
| shell: bash | |
| run: | | |
| cmake -B build -G Ninja \ | |
| -DCMAKE_C_COMPILER=${{ matrix.config.cc }} \ | |
| -DCMAKE_CXX_COMPILER=${{ matrix.config.cxx }} \ | |
| -DCMAKE_CXX_STANDARD:STRING=17 \ | |
| ${{ matrix.config.os != 'windows-latest' && '-DCMAKE_CXX_FLAGS="-mtune=native -march=native"' || '' }} \ | |
| ${{ matrix.config.os != 'windows-latest' && '-DCMAKE_C_FLAGS="-mtune=native -march=native"' || '' }} \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DEXTERNAL_PROJECT_BUILD_TYPE:STRING=Release \ | |
| -DBUILD_TESTING=ON \ | |
| -DBUILD_SHARED_LIBS=ON \ | |
| -DBRAINSTools_REQUIRES_VTK=OFF \ | |
| -DUSE_BRAINSABC:BOOL=OFF \ | |
| -DUSE_BRAINSCreateLabelMapFromProbabilityMaps:BOOL=ON \ | |
| -DUSE_BRAINSDWICleanup:BOOL=OFF \ | |
| -DUSE_BRAINSInitializedControlPoints:BOOL=OFF \ | |
| -DUSE_BRAINSLabelStats:BOOL=OFF \ | |
| -DUSE_BRAINSLandmarkInitializer:BOOL=OFF \ | |
| -DUSE_BRAINSMultiModeSegment:BOOL=OFF \ | |
| -DUSE_BRAINSMultiSTAPLE:BOOL=OFF \ | |
| -DUSE_BRAINSMush:BOOL=OFF \ | |
| -DUSE_BRAINSPosteriorToContinuousClass:BOOL=OFF \ | |
| -DUSE_BRAINSResample:BOOL=ON \ | |
| -DUSE_BRAINSROIAuto:BOOL=OFF \ | |
| -DUSE_BRAINSSnapShotWriter:BOOL=OFF \ | |
| -DUSE_BRAINSStripRotation:BOOL=OFF \ | |
| -DUSE_BRAINSTransformConvert:BOOL=OFF \ | |
| -DUSE_ConvertBetweenFileFormats:BOOL=OFF \ | |
| -DUSE_ImageCalculator:BOOL=OFF \ | |
| -DUSE_ReferenceAtlas:BOOL=OFF \ | |
| -DBRAINSTools_BUILD_DICOM_SUPPORT:BOOL=OFF \ | |
| -DUSE_DWIConvert:BOOL=OFF | |
| # Disable testing that requires VTK | |
| # -DBRAINSTools_BUILD_DICOM_SUPPORT:BOOL=OFF \ | |
| # -DUSE_DWIConvert:BOOL=OFF | |
| - name: Build | |
| shell: bash | |
| run: cmake --build build --config Release --parallel ${{ matrix.config.parallel }} | |
| - name: Test | |
| working-directory: build/BRAINSTools-Release-EPRelease-build | |
| shell: bash | |
| run: > | |
| ninja clean | |
| ctest -D ExperimentalStart | |
| ctest -D ExperimentalConfigure | |
| ctest -D ExperimentalBuild -j ${{ matrix.config.parallel }} | |
| ctest -D ExperimentalTest --schedule-random --output-on-failure -j ${{ matrix.config.parallel }} | |
| ctest -D ExperimentalSubmit | |
| - name: Upload Build Logs | |
| uses: actions/upload-artifact@v4 | |
| if: always() # Changed from failure() to always() | |
| with: | |
| name: build-logs-${{ matrix.config.name }} | |
| path: | | |
| build/CMakeFiles/CMakeOutput.log | |
| build/CMakeFiles/CMakeError.log | |
| build/Testing/Temporary/LastTest.log |