QuPath BIOP Extension

This repo adds some tools developed at the BIOP to ease scripting and assist user project in Qupath

Warning

Versions from v3.3.0 or above of this extension will only work on QuPath 0.6.0 or later. Please update QuPath to the latest version. In case you are stuck with QuPath v0.5.1, the last release to work is v3.2.0

Installing

On QuPath 0.6.x

• Install and setup the qupath-biop-catalog first.
• Open the Extension Manager Extension -> Manage extensions
• Follow steps described in the official documention to browse and install/update the latest version of QuPath BIOP extension from the QuPath BIOP catalog.

Note

If your extensions directory is unset, create a new empty folder somewhere on your computer. On QuPath, go under Edit -> Preferences -> Extensions and browse the empty folder you've just created. Extensions will then be added inside this folder.

• You might then need to restart QuPath (but not your computer).

On QuPath 0.5.x

Download the latest qupath-extension-biop-[version].jar file from releases and drag it onto the main QuPath window.

If you haven't installed any extensions before, you'll be prompted to select a QuPath user directory. The extension will then be copied to a location inside that directory.

You might then need to restart QuPath (but not your computer).