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Add <code>--trim_polyG</code> to fastp

Status: Open.

#52 In BCCDC-PHL/taxon-abundance;

· taranewman opened on Aug 22, 2025

Adjust_bracken_percentages_for_unclassified_reads.py produces empty file if no reads are re-estimated

Status: Open.

#38 In BCCDC-PHL/taxon-abundance;

· taranewman opened on May 29, 2024

Add testing pipeline

Status: Open.

#37 In BCCDC-PHL/taxon-abundance;

· dfornika opened on May 13, 2024

Consider using the <code>--memory-mapping</code> flag on kraken2 to avoid high RAM usage

Status: Open.

#23 In BCCDC-PHL/taxon-abundance;

· dfornika opened on Oct 12, 2022

Pipeline fails when any sample has zero reads.

Status: Open.

#18 In BCCDC-PHL/taxon-abundance;

· dfornika opened on Apr 22, 2022

Split the modules out into separate files

Status: Open.

#1 In BCCDC-PHL/taxon-abundance;

· andersgs opened on Jul 2, 2021