Add scripts for building apptainer container and fix short read sampl… #3
Workflow file for this run
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| name: Build and Push Container Images | |
| on: | |
| push: | |
| tags: | |
| - v* | |
| workflow_dispatch: | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| GHCR_USERNAME: ${{ secrets.GHCR_USERNAME }} | |
| jobs: | |
| build_and_push: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| packages: write | |
| contents: read | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Apptainer | |
| run: | | |
| .github/scripts/install_apptainer.sh | |
| - name: Check Apptainer installation | |
| run: apptainer --version | |
| - name: Install Wave CLI | |
| run: | | |
| .github/scripts/install_wave-cli.sh | |
| - name: Check wave installation | |
| run: wave --version | |
| - name: Build images | |
| run: | | |
| .github/scripts/build_container_images_wave.sh | |
| - name: Push images | |
| run: | | |
| echo ${GITHUB_TOKEN} | apptainer registry login -u ${GHCR_USERNAME} --password-stdin oras://ghcr.io | |
| .github/scripts/push_container_images_wave.py --wave-jsons-dir wave_images --images-dir wave_images |