IBL Ephys Alignment GUI

GUI developed by the International Brain Laboratory for aligning electrophysiology data with histology data.

Usage instructions can be found on the iblapps wiki

Allen Institute for Neural Dynamics fork

This version of the GUI includes the following modifications:

• Only include code for the alignment app (and rename to ephys_alignment_gui)
• Restrict dependencies to iblatlas, PyQt5, and pyqtgraph
• Use separate directories for loading and saving, to allow input data to live in a read-only filesystem

Installing

This version can be installed from GitHub via pip:

pip install git+https://github.com/AllenNeuralDynamics/ibl-ephys-alignment-gui.git

If you're running an Ubuntu workstation on Code Ocean, just add that line to the post-install script.

Once the package has been installed in your environment, you can run the GUI with the following command:

launch