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Annotation of contigs from TotalRNA

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This repository is a collection of notebooks to annotate contigs from de novo assembly of mRNA reads from Total-RNA sequencing.

The available databases are:

  • AromaDeg
  • CARD
  • MCycDB
  • SCyDB
  • NCBI AMR
  • Plasticdb
  • AnnoTree

We include some toy data to test whether the notebooks work as expected. This repository is still in progress, as it was intended for internal use.

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Annotation of contigs from TotalRNA

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