NGS Pipeline Orchestration

About The Project

The purpose of this project was to explore pipeline orchestration methodologies and to gain deeper understanding of NGS workflow automation.

Getting Started

Scripts are comatable with Python 3.9.14+, Pandas 2.0+, NumPy 1.24+, Biopython 1.80+, Schedule 1.2+, Slack_sdk 3.21.2+.

Prerequisites

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Installation

conda create -n env_name python=3.9.14

conda install pandas

conda install numpy

conda install -c conda-forge schedule

conda install -c conda-forge slack_sdk