Bump the requirements group with 3 updates (#3163)

Bumps the requirements group with 3 updates: [numpy](https://github.com/numpy/numpy), [pytest](https://github.com/pytest-dev/pytest) and [pymongo](https://github.com/mongodb/mongo-python-driver).


Updates `numpy` from 2.3.0 to 2.3.1
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.3.0...v2.3.1)

Updates `pytest` from 8.4.0 to 8.4.1
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.4.0...8.4.1)

Updates `pymongo` from 4.13.1 to 4.13.2
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.13.1...4.13.2)

---
updated-dependencies:
- dependency-name: numpy
  dependency-version: 2.3.1
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
- dependency-name: pytest
  dependency-version: 8.4.1
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
- dependency-name: pymongo
  dependency-version: 4.13.2
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: requirements
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Author: dependabot[bot]

requirements_dev_minimal.txt

@@ -5,4 +5,4 @@ numcodecs==0.15.1
 msgpack-python==0.5.6
 setuptools-scm==8.3.1
 # test requirements
-pytest==8.4.0
+pytest==8.4.1

requirements_dev_numpy.txt

@@ -1,4 +1,4 @@
 # Break this out into a separate file to allow testing against
 # different versions of numpy. This file should pin to the latest
 # numpy version.
-numpy==2.3.0
+numpy==2.3.1

requirements_dev_optional.txt

@@ -8,7 +8,7 @@ azure-storage-blob==12.24.1
 redis==6.2.0
 types-redis
 types-setuptools
-pymongo==4.13.1
+pymongo==4.13.2
 # optional test requirements
 coverage
 pytest-cov==6.2.1