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PE.1.2 branch not annotated on SC2 tree

Status: Open.

#416 In yatisht/usher;

· corneliusroemer opened on Sep 13, 2025

Metadata of provided reference tree

Status: Open.

#412 In yatisht/usher;

· jcgrenier opened on Aug 21, 2025

Regression (v0.6.6): usher creates tree with 0 branch length

Status: Open.

#411 In yatisht/usher;

· gp201 opened on Aug 19, 2025

matOptimize with VCF hits SIGTRAP error condition on some input trees/VCFs

Status: Open.

#406 In yatisht/usher;

· AngieHinrichs opened on Jun 27, 2025

Meaning of warning

Status: Open.

#405 In yatisht/usher;

· josephhughes opened on Jun 24, 2025

Support newer protobuf

Status: Open.

#404 In yatisht/usher;

· corneliusroemer opened on Jun 19, 2025

New method to get seqs from Genbase

Status: Open.

#401 In yatisht/usher;

· xz-keg opened on Jun 5, 2025

Remove 6183, 9142 and 13339 from masked sites

Status: Open.

#397 In yatisht/usher;

· xz-keg opened on May 23, 2025

<code>matUtils extract</code> creates invalid MAT/NWK with branch lengths of 0

Status: Open.

#392 In yatisht/usher;

· aofarrel opened on Apr 1, 2025

Build for Apple silicon (ARM)

Status: Open.

#391 In yatisht/usher;

· corneliusroemer opened on Mar 31, 2025

Output nwk filenames are inconsistent

Status: Open.

#389 In yatisht/usher;

· aofarrel opened on Feb 14, 2025

Segmentation fault

Status: Open.

#388 In yatisht/usher;

· guoqiangu opened on Dec 18, 2024