Merge pull request #12 from yamada-lab/develop

Develop

Author: omixer

README.md

@@ -62,7 +62,7 @@ To configure the behavior of the application, create `instance/config.py` with t
 4. Log into the admin console (e.g. http://localhost:8080/admin), then click the 'Update annotation mapping' link.
 
 ## Publications
-- Uchiyama T, Irie M, Mori H, Kurokawa K, Yamada T. FuncTree: Functional Analysis and Visualization for Large-Scale Omics Data. PLoS One. 2015 May 14;10(5):e0126967. doi: 10.1371/journal.pone.0126967. eCollection 2015. PubMed PMID: 25974630; PubMed Central PMCID: PMC4431737.
+- Darzi Y, Yamate Y, Yamada T. FuncTree2: an interactive radial tree for functional hierarchies and omics data visualization. Bioinformatics, btz245. 20 April 2019; DOI: [10.1093/bioinformatics/btz245](https://doi.org/10.1093/bioinformatics/btz245); PubMed PMID: [31004476](https://www.ncbi.nlm.nih.gov/pubmed/31004476).
 
 ## License
 FuncTree 2 is released under the [MIT License](LICENSE).

functree/templates/about.html

@@ -15,16 +15,30 @@ <h2>{{title}}</h2>
     <h3>Publications</h3>
     <div>
     	<p>
+    	<i><a href="https://doi.org/10.1093/bioinformatics/btz245" target="_blank">FuncTree2: an interactive radial tree for functional hierarchies and omics data visualization</a></i>
+		<br />
+		Darzi Y, Yamate Y, Yamada T.
+		<br /> 
+		Bioinformatics, btz245. 20 April 2019; <a href="https://doi.org/10.1093/bioinformatics/btz245" target="_blank">https://doi.org/10.1093/bioinformatics/btz245</a>
+		</p>
+		
+		<p>
     	<i><a href="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0126967" target="_blank">FuncTree: Functional Analysis and Visualization for Large-Scale Omics Data</a></i>
 		<br />
 		Uchiyama T, Irie M, Mori H, Kurokawa K, Yamada T.
 		<br /> 
-		PLoS ONE 10(5): e0126967. 2015 May 14; https://doi.org/10.1371/journal.pone.0126967
+		PLoS ONE 10(5): e0126967. 2015 May 14; <a href="https://doi.org/10.1371/journal.pone.0126967" target="_blank">https://doi.org/10.1371/journal.pone.0126967</a>
 		</p>
+		
     </div>
     <hr />
     <h3>Change log</h3>
     <br />
+    <h5>Version 0.8.3.0 (2019-05-08)</h5>
+    <ul>
+    	<li>Update citation.
+    	<li>Upgrade dependencies.
+    </ul>
     <h5>Version 0.8.2.0 (2019-03-13)</h5>
 	<ul>
 		<li>Performance improvement

requirements.txt

@@ -11,7 +11,7 @@ Flask-HTTPAuth==3.2.3
 flask-mongoengine==0.9.3
 Flask-WTF==0.14.2
 itsdangerous==0.24
-Jinja2==2.9.6
+Jinja2==2.10.1
 lxml==3.8.0
 MarkupSafe==1.0
 mongoengine==0.13.0