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Hi there,
Thank you so much for developing this package! It's been wonderfully easy for us to use, right out of the box. I had a quick feature suggestion- it could be helpful to keep raw counts from each sample appended to the end of the results (perhaps a flag == TRUE to give ppl the option of having the counts or not?). I find myself going back to the count matrices after getting my list of significantly differential proteins, but thought it could be built into the output of outputResults().
Anyway, thanks again!
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