Version 0.4.1

Fixes bugs in plotFeature in v0.4.0

Version 0.4.0

Changes:

• Update liger object to include cell metadata in cell.data slot (default nUMI, nGene, etc)
• Add new visualization functions plotFeature, plotGeneLoadings
• Add faster Rcpp based implementations of selectGenes and scaleNotCenter
• Add basic unit tests
• Minor updates to plotGene
• Minor fixes for runTSNE, selectGenes
• Minor updates to liger object structure

Version 0.3.0

Changes:

• Improve suggestLambda and suggestK functionality and add support for progress bar
• Add dependency to doSNOW, remove doParallel
• Add Read10X function
• Add plotClusterFactors function
• Add convertOldLiger function
• Minor performance improvement in utility function MergeSparseDataAll
• Minor updates to seuratToLiger and ligerToSeurat
• Minor documentation updates

Development version of liger

v0.1.0

First tracked development version