Allow to use last jupyter notebook tool version in batch mode with R code

[yvanlebras]

Describe the bug
Creating a notebook with the last Jupyter notebook tool https://github.com/usegalaxy-eu/galaxy/blob/release_24.1_europe/tools/interactive/interactivetool_jupyter_notebook_1.0.1.xml using R env don't allows to reuse the created notebook with the same Jupyter notebook tool version in batch mode as R env is not recognize as a "real" R kernel, only Python and Julia Kernels are "really" existing so useable in batch mode

Browser and Operating System
Operating System: Windows
Browser: Firefox

To Reproduce
Steps to reproduce the behavior:

1. Create a jupyter notebook using R env in the last version of jupyternotebook tool
2. kill the job and execute the same last version of jupyternotebook tool in batch mode to execute the jupyter notebook created in the previous step
3. Look at the error

Expected behavior
no error on execution

Proposed solution: Update existing docker image https://github.com/usegalaxy-eu/galaxy/blob/release_24.1_europe/tools/interactive/interactivetool_jupyter_notebook_1.0.1.xml#L3 so it can propose prposed "env" as "real" kernels, notably R (and pay attention to keep the same kernel name than in previous images used for previous version of the tool)

[yvanlebras]

Link with previous issue #244

[bgruening]

Can you attach an example Notebook please?

[yvanlebras]

THANK YOU Björn for your message!
An example is accessible there: https://ecology.usegalaxy.eu/u/ylebras/h/test-jupyter-notebookarthur-internshipantarctic-ecosystem-state "step 9"

[yvanlebras]

And the error message : jupyter_client.kernelspec.NoSuchKernel: No such kernel named conda-env-rlang-kernel-r