Merge pull request #505 from usc-isi-i2/development-code-test

security updates and build fixes

Author: Bidisha010496

karma-app/desktop/package.json

@@ -30,7 +30,7 @@
   },
   "devDependencies": {
     "chai": "^3.5.0",
-    "electron": "10.1.3",
+    "electron": "10.2.0",
     "electron-builder": "^5.12.1",
     "electron-mocha": "^3.0.0",
     "fs-jetpack": "^0.9.0",

karma-commands/commands-common/pom.xml

@@ -22,7 +22,7 @@
 	    <dependency>
 		    <groupId>org.apache.httpcomponents</groupId>
 		    <artifactId>httpclient</artifactId>
-		    <version>4.5.2</version>
+		    <version>4.5.13</version>
 		</dependency>
 
 	    <dependency>

karma-commands/commands-worksheet/pom.xml

@@ -37,10 +37,10 @@
 		    <artifactId>karma-common</artifactId>
 		    <version>${project.version}</version>
 	    </dependency>
-	    <dependency>
-		    <groupId>edu.isi.karma.services</groupId>
-		    <artifactId>entityExtraction</artifactId>
-		    <version>0.0.1</version>
-		</dependency>
+<!--	    <dependency>-->
+<!--		    <groupId>edu.isi.karma.services</groupId>-->
+<!--		    <artifactId>entityExtraction</artifactId>-->
+<!--		    <version>0.0.1</version>-->
+<!--		</dependency>-->
     </dependencies>
 </project>

karma-common/pom.xml

@@ -131,7 +131,7 @@
 	<dependency>
 	    <groupId>org.apache.httpcomponents</groupId>
 	    <artifactId>httpclient</artifactId>
-	    <version>4.5.2</version>
+	    <version>4.5.13</version>
 	</dependency>
 
 	<dependency>

karma-jsonld/pom.xml

@@ -11,7 +11,7 @@
         <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
         <project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
 
-        <jackson.version>2.10.3</jackson.version>
+        <jackson.version>2.12.1</jackson.version>
         <junit.version>4.13.1</junit.version>
         <slf4j.version>1.7.9</slf4j.version>
     </properties>
@@ -29,7 +29,7 @@
         <dependency>
             <groupId>commons-io</groupId>
             <artifactId>commons-io</artifactId>
-            <version>2.4</version>
+            <version>2.7</version>
         </dependency>
         <dependency>
             <groupId>org.apache.spark</groupId>
@@ -109,7 +109,7 @@
         <dependency>
             <groupId>commons-io</groupId>
             <artifactId>commons-io</artifactId>
-            <version>2.4</version>
+            <version>2.7</version>
         </dependency>
 
         <dependency>

karma-web-services/web-services-publish-es/pom.xml

@@ -14,7 +14,7 @@
 
     <properties>
     	<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
-    	<es.version>1.3.2</es.version>
+    	<es.version>6.8.17</es.version>
     </properties>
 
     <dependencies>
@@ -74,7 +74,7 @@
 		<dependency>
 		  <groupId>org.apache.httpcomponents</groupId>
 		  <artifactId>httpclient</artifactId>
-		  <version>4.5.2</version>
+		  <version>4.5.13</version>
 		</dependency>
 
 		<dependency>

pom.xml

@@ -15,17 +15,17 @@
 		<module>karma-jdbc</module>
 		<module>karma-util</module>
 		<module>karma-commands</module>
-		<module>karma-mr</module>
+<!--		<module>karma-mr</module>-->
 		<module>karma-web-services</module>
 		<module>karma-typer</module>
 		<module>karma-jsonld</module>
-		<module>karma-spark</module>
+<!--		<module>karma-spark</module>-->
 	</modules>
 
 
 	<properties>
 		<skipTests>true</skipTests>
-    <jettyVersion>9.4.27.v20200227</jettyVersion>
+    <jettyVersion>9.4.41.v20210516</jettyVersion>
     <project.build.sourceEncoding>
       UTF-8
     </project.build.sourceEncoding>
@@ -50,7 +50,7 @@
 
 
 	  <apache.commons.lang.version>2.4</apache.commons.lang.version>
-	  <apache.commons.io.version>2.4</apache.commons.io.version>
+	  <apache.commons.io.version>2.7</apache.commons.io.version>
 	  <apache.commons.compress.version>1.5</apache.commons.compress.version>
 	  <apache.commons.codec.version>1.8</apache.commons.codec.version>
 
@@ -69,7 +69,7 @@
 	  <jdom.version>1.1.2</jdom.version>
 
 	  <gson.version>2.2.2</gson.version>
-	  <httpcomponents.version>4.5.2</httpcomponents.version>
+	  <httpcomponents.version>4.5.13</httpcomponents.version>
 	  <guava.version>29.0-jre</guava.version>
 	  <spring.version>5.2.4.RELEASE</spring.version>
 
@@ -295,7 +295,7 @@
         <dependency>
         	<groupId>org.apache.poi</groupId>
         	<artifactId>poi</artifactId>
-        	<version>3.8-beta5</version>
+        	<version>3.17</version>
         </dependency>
         <dependency>
         	<groupId>org.apache.poi</groupId>