Benchmark alignment

[yashpatel6]

Also, we probably want to benchmark align_mtDNA_MToolBox with various # CPUs like we did for align-DNA as a separate task.

Originally posted by @tyamaguchi-ucla in #133 (review)

[kiarod]

In terms of benchmarking the tool I have data already on ~20000 runs and the percentile plot of the CPU% usage looks like below.

@tyamaguchi-ucla do you think this data is sufficient for benchmarking?

[yashpatel6]

Benchmarking here is intended to explicitly test different allocations of CPUs for the tool/process and look at results like runtime, failures, memory usage, etc. and then select an optimal default setting. The runs you've looked at all use the same allocation so they don't quite serve the purpose of general benchmarking for the alignment

[kiarod]

yeah that makes sense, happy to do some more explicit benchmarking on the tool