Merge pull request #174 from devmotion/dw/julia_1_6

Support Julia LTS and update CompatHelper

Author: tpapp

.github/workflows/CI.yml

@@ -15,7 +15,7 @@ jobs:
       fail-fast: false
       matrix:
         version:
-          - '1.8' # Replace this with the minimum Julia version that your package supports. E.g. if your package requires Julia 1.5 or higher, change this to '1.5'.
+          - '1.6' # Replace this with the minimum Julia version that your package supports. E.g. if your package requires Julia 1.5 or higher, change this to '1.5'.
           - '1' # Leave this line unchanged. '1' will automatically expand to the latest stable 1.x release of Julia.
           - 'nightly'
         os:

.github/workflows/CompatHelper.yml

@@ -1,22 +1,47 @@
-name: CompatHelper
+# see the docs at https://github.com/JuliaRegistries/CompatHelper.jl
 
+name: CompatHelper
 on:
   schedule:
-    - cron: '00 00 * * *'
+    - cron: 0 0 * * *
   workflow_dispatch:
-
+permissions:
+  contents: write
+  pull-requests: write
 jobs:
   CompatHelper:
-    runs-on: ${{ matrix.os }}
-    strategy:
-      matrix:
-        julia-version: [1.2.0]
-        julia-arch: [x86]
-        os: [ubuntu-latest]
+    runs-on: ubuntu-latest
     steps:
-      - name: Pkg.add("CompatHelper")
-        run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
-      - name: CompatHelper.main()
+      - name: Check if Julia is already available in the PATH
+        id: julia_in_path
+        run: which julia
+        continue-on-error: true
+      - name: Install Julia, but only if it is not already available in the PATH
+        uses: julia-actions/setup-julia@v1
+        with:
+          version: '1'
+          arch: ${{ runner.arch }}
+        if: steps.julia_in_path.outcome != 'success'
+      - name: "Add the General registry via Git"
+        run: |
+          import Pkg
+          ENV["JULIA_PKG_SERVER"] = ""
+          Pkg.Registry.add("General")
+        shell: julia --color=yes {0}
+      - name: "Install CompatHelper"
+        run: |
+          import Pkg
+          name = "CompatHelper"
+          uuid = "aa819f21-2bde-4658-8897-bab36330d9b7"
+          version = "3"
+          Pkg.add(; name, uuid, version)
+        shell: julia --color=yes {0}
+      - name: "Run CompatHelper"
+        run: |
+          import CompatHelper
+          CompatHelper.main()
+        shell: julia --color=yes {0}
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        run: julia -e 'using CompatHelper; CompatHelper.main()'
+          COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
+

Project.toml

@@ -1,7 +1,7 @@
 name = "DynamicHMC"
 uuid = "bbc10e6e-7c05-544b-b16e-64fede858acb"
 authors = ["Tamas K. Papp <tkpapp@gmail.com>"]
-version = "3.4.0"
+version = "3.4.1"
 
 [deps]
 ArgCheck = "dce04be8-c92d-5529-be00-80e4d2c0e197"
@@ -25,4 +25,4 @@ LogExpFunctions = "0.3"
 Parameters = "0.11, 0.12"
 ProgressMeter = "1"
 TensorCast = "0.4"
-julia = "1.8"
+julia = "1.6"

test/Project.toml

@@ -19,4 +19,3 @@ UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed"
 
 [compat]
 LogDensityTestSuite = "0.6"
-

test/jet.jl

@@ -1,7 +1,5 @@
-if VERSION >= v"1.7"
-    using JET
-    insert!(LOAD_PATH, 2, "..")
-    @testset "static analysis with JET.jl" begin
-        @test isempty(JET.get_reports(report_package(DynamicHMC, target_modules=(DynamicHMC,))))
-    end
+using JET
+insert!(LOAD_PATH, 2, "..")
+@testset "static analysis with JET.jl" begin
+    @test isempty(JET.get_reports(report_package(DynamicHMC, target_modules=(DynamicHMC,))))
 end

test/runtests.jl

@@ -43,6 +43,7 @@ include("sample-correctness_tests.jl")
 #### statis analysis
 ####
 
-if isempty(VERSION.prerelease)  # do not test on nightly
+# do not test on older Julia versions and nightly
+if VERSION >= v"1.7" && isempty(VERSION.prerelease)
     include("jet.jl")
 end

test/sample-correctness_tests.jl

@@ -70,15 +70,13 @@ end
     NUTS_tests(RNG, ℓ, "mixture of two normals", 1000; τ_alert = 0.15)
 end
 
-if VERSION ≥ v"1.8" # FIXME why is it broken on 1.6? Some RNG issue?
-    @testset "NUTS tests with heavier tails and skewness" begin
-        K = 5
+@testset "NUTS tests with heavier tails and skewness" begin
+    K = 5
 
-        ℓ = elongate(1.2, StandardMultivariateNormal(K))
-        NUTS_tests(RNG, ℓ, "elongate(1.2, 𝑁)", 1000; p_alert = 1e-5, EBFMI_alert = 0.2)
+    ℓ = elongate(1.2, StandardMultivariateNormal(K))
+    NUTS_tests(RNG, ℓ, "elongate(1.2, 𝑁)", 1000; p_alert = 1e-5, EBFMI_alert = 0.2)
 
-        # this has very nasty tails to we relax requirements a bit
-        ℓ = elongate(1.1, shift(ones(K), StandardMultivariateNormal(K)))
-        NUTS_tests(RNG, ℓ, "skew elongate(1.1, 𝑁)", 10000; τ_alert = 0.1, EBFMI_alert = 0.2)
-    end
+    # this has very nasty tails to we relax requirements a bit
+    ℓ = elongate(1.1, shift(ones(K), StandardMultivariateNormal(K)))
+    NUTS_tests(RNG, ℓ, "skew elongate(1.1, 𝑁)", 10000; τ_alert = 0.1, EBFMI_alert = 0.2)
 end