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regulatory-networks

Here are 12 public repositories matching this topic...

boolsi / boolsi

Distributed simulations and analysis of synchronous Boolean networks

python bioinformatics systems-biology mpi boolean-networks regulatory-networks boolsi distributed-simulations

Updated Sep 15, 2022
Python

AMSSwanglab / SpecVar

SpecVar is a convenient tool for estimating interpretable genetic correlation of human complex traits and annotating the SNPs with context specific regulatory networks

gwas variant-interpretation regulatory-networks relevant-tissue phenotopic-correlation

Updated May 8, 2023
Shell

arnaudporet / kali

In silico therapeutic target discovery using network attractors: avoiding pathological phenotypes

computational-biology drug-discovery biological-networks in-silico therapeutic-targets boolean-networks biological-simulation biological-modeling regulatory-networks

Updated May 14, 2022
Go

arnaudporet / pathrider

Finding paths of interest in networks

paths graphs computational-biology pathfinding networks shortest-paths signaling-pathways pathways signaling-networks network-analysis pathway-analysis graph-analysis biological-networks regulatory-networks upstream-paths downstream-paths pathway-tools

Updated May 14, 2022
Go

viktormiok / CoNI

Correlation Guided Network Integration

network-analysis bipartite-graphs regulatory-networks hypergraph-learning

Updated Sep 4, 2024
R

biopatternsg / biopatternsg

This project combines Generative AI and Logic AI to form an integrated process, a pipeline, that retrieves large volumes of scientific information and produces logical models that can be validated and leveraged by human experts. Our goals are to organize and to analyze knowledge with the assistance of AI and other bio-information retrieval tools.

java nlp bioinformatics genetics pdb prolog bioinformatics-pipeline uniprot geneontology grn bioinformatics-tool regulatory-networks

Updated Aug 3, 2025

arnaudporet / stream

Streaming over networks

graph-algorithms graphs computational-biology pathfinding pathfinder networks network-analysis pathfinding-algorithms graph-analysis graph-traversal path-finding biological-networks network-algorithms networks-biology path-analysis biological-modeling regulatory-networks upstream-paths downstream-paths

Updated Jul 10, 2019
Go

sturkarslan / miner2

Mechanistic Inference of Node-Edge Relationships (MINER)

python modeling cancer-genomics regulatory-networks

Updated Feb 19, 2020
R

arnaudporet / konect

Connecting nodes

graph-algorithms graphs computational-biology pathfinding pathfinder networks shortest-paths network-analysis pathfinding-algorithms graph-analysis graph-traversal path-finding biological-networks network-algorithms networks-biology shortest-path-algorithm path-analysis biological-modeling regulatory-networks

Updated Jul 10, 2019
Go

Eandreas1857 / 2023_GGN_Robustness

Code for 2023 "Measuring Robustness of the Gap Gene Network" paper

dynamics robustness regulatory-networks gap-gene-network dsgrn switching-systems

Updated May 15, 2023
Jupyter Notebook

arnaudporet / smoosim

Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations

simulation modeling computational-biology networks dynamical-systems fuzzy-logic biological-networks logical-operators edge-computing networks-biology boolean-networks biological-simulation biological-modeling regulatory-networks continuous-logic edge-computation edge-tuning

Updated Apr 5, 2019
R

vivekkohar / sRACIPE

sRACIPE for bioconductor

gene r cpp genetics simulation stochastic simulated-annealing regulatory-networks racipe sracipe gene-circuit-explorer

Updated Mar 25, 2021
R

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