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Escape characters written in code as \n and \t are converted to their character equivalents before being sent to uncrustify. This can very easily break code regardless of how conservative the uncrustify settings may be.
The problem is due to using echo to pipe the source code to uncrustify. echo decodes the escape characters, sending invalid input to uncrustify.
I have resolved this in pull request #8 by using herestring input which leaves the escape characters intact: