From 0f105548fab4ef2664b171413b32bb04fbd0b9a4 Mon Sep 17 00:00:00 2001 From: HINAUT Xavier Date: Mon, 3 Dec 2018 00:03:46 +0100 Subject: [PATCH 1/5] added missing __init__.py in network and network_analysis folders of avgn --- avgn/network/__init__.py | 0 avgn/network_analysis/__init__.py | 0 2 files changed, 0 insertions(+), 0 deletions(-) create mode 100755 avgn/network/__init__.py create mode 100755 avgn/network_analysis/__init__.py diff --git a/avgn/network/__init__.py b/avgn/network/__init__.py new file mode 100755 index 0000000..e69de29 diff --git a/avgn/network_analysis/__init__.py b/avgn/network_analysis/__init__.py new file mode 100755 index 0000000..e69de29 From ea2609f09054593f4cbfa15660e9beefbe0c425d Mon Sep 17 00:00:00 2001 From: HINAUT Xavier Date: Mon, 3 Dec 2018 00:11:08 +0100 Subject: [PATCH 2/5] some packages missing in requirements.txt --- requirements.txt | 3 +++ 1 file changed, 3 insertions(+) diff --git a/requirements.txt b/requirements.txt index 1baac89..73021ef 100755 --- a/requirements.txt +++ b/requirements.txt @@ -7,6 +7,7 @@ pandas==0.22.0 scikit_image==0.13.1 librosa==0.6.0 h5py==2.8.0 +hdbscan=0.8.18 numpy==1.14.5 lmfit==0.9.9 seaborn==0.9.0 @@ -17,3 +18,5 @@ python-dotenv==0.9.1 skimage==0.0 scikit_learn==0.20.0 tensorflow==1.11.0 +umap=0.1.1 +xlrd==1.1.0 \ No newline at end of file From 7f0765a4375e8e7ab4f2235741b3e82a3b5b5dd6 Mon Sep 17 00:00:00 2001 From: HINAUT Xavier Date: Mon, 3 Dec 2018 09:38:24 +0100 Subject: [PATCH 3/5] corrected requirements: replace umap by umap-learn --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index 73021ef..2e3a859 100755 --- a/requirements.txt +++ b/requirements.txt @@ -18,5 +18,5 @@ python-dotenv==0.9.1 skimage==0.0 scikit_learn==0.20.0 tensorflow==1.11.0 -umap=0.1.1 +umap-learn==0.3.7 xlrd==1.1.0 \ No newline at end of file From c7c88ce6165f5f296bb71579c2983255bbe72659 Mon Sep 17 00:00:00 2001 From: HINAUT Xavier Date: Mon, 3 Dec 2018 15:38:03 +0100 Subject: [PATCH 4/5] corrected my typo in requirements.txt --- requirements.txt | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/requirements.txt b/requirements.txt index 2e3a859..edaabef 100755 --- a/requirements.txt +++ b/requirements.txt @@ -7,7 +7,7 @@ pandas==0.22.0 scikit_image==0.13.1 librosa==0.6.0 h5py==2.8.0 -hdbscan=0.8.18 +hdbscan==0.8.18 numpy==1.14.5 lmfit==0.9.9 seaborn==0.9.0 @@ -19,4 +19,4 @@ skimage==0.0 scikit_learn==0.20.0 tensorflow==1.11.0 umap-learn==0.3.7 -xlrd==1.1.0 \ No newline at end of file +xlrd==1.1.0 From 5b0d122eead492e1201b30b73f8e90c9210bc009 Mon Sep 17 00:00:00 2001 From: HINAUT Xavier Date: Mon, 3 Dec 2018 15:46:43 +0100 Subject: [PATCH 5/5] corrected requirements.txt: replace skimage==0.0 by scikit-image==0.13.1 --- requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements.txt b/requirements.txt index edaabef..c8829e1 100755 --- a/requirements.txt +++ b/requirements.txt @@ -15,7 +15,7 @@ matplotlib==2.2.2 ipython==7.0.1 Pillow==5.3.0 python-dotenv==0.9.1 -skimage==0.0 +scikit-image==0.13.1 scikit_learn==0.20.0 tensorflow==1.11.0 umap-learn==0.3.7