From 206619df8af7dc972bfe9f0f0c2f10348286cc99 Mon Sep 17 00:00:00 2001 From: Teun van den Brand Date: Fri, 12 Jan 2024 14:55:58 +0100 Subject: [PATCH 1/6] Position scales use ggplot_global for aesthetics --- R/scale-date.R | 10 +++++----- R/scale-discrete-.R | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/R/scale-date.R b/R/scale-date.R index f607b78847..82450b106c 100644 --- a/R/scale-date.R +++ b/R/scale-date.R @@ -79,7 +79,7 @@ scale_x_date <- function(name = waiver(), sec.axis = waiver()) { sc <- datetime_scale( - c("x", "xmin", "xmax", "xend"), + ggplot_global$x_aes, "date", name = name, palette = identity, @@ -116,7 +116,7 @@ scale_y_date <- function(name = waiver(), sec.axis = waiver()) { sc <- datetime_scale( - c("y", "ymin", "ymax", "yend"), + ggplot_global$y_aes, "date", name = name, palette = identity, @@ -154,7 +154,7 @@ scale_x_datetime <- function(name = waiver(), sec.axis = waiver()) { sc <- datetime_scale( - c("x", "xmin", "xmax", "xend"), + ggplot_global$x_aes, "time", name = name, palette = identity, @@ -194,7 +194,7 @@ scale_y_datetime <- function(name = waiver(), sec.axis = waiver()) { sc <- datetime_scale( - c("y", "ymin", "ymax", "yend"), + ggplot_global$y_aes, "time", name = name, palette = identity, @@ -315,7 +315,7 @@ datetime_scale <- function(aesthetics, transform, trans = deprecated(), # x/y position aesthetics should use ScaleContinuousDate or # ScaleContinuousDatetime; others use ScaleContinuous - if (all(aesthetics %in% c("x", "xmin", "xmax", "xend", "y", "ymin", "ymax", "yend"))) { + if (all(aesthetics %in% c(ggplot_global$x_aes, ggplot_global$y_aes))) { scale_class <- switch( transform, date = ScaleContinuousDate, diff --git a/R/scale-discrete-.R b/R/scale-discrete-.R index b5f2f53df3..7eaadacd3b 100644 --- a/R/scale-discrete-.R +++ b/R/scale-discrete-.R @@ -64,7 +64,7 @@ scale_x_discrete <- function(name = waiver(), ..., expand = waiver(), guide = waiver(), position = "bottom") { sc <- discrete_scale( - aesthetics = c("x", "xmin", "xmax", "xend"), name = name, + aesthetics = ggplot_global$x_aes, name = name, palette = identity, ..., expand = expand, guide = guide, position = position, super = ScaleDiscretePosition From 5c7c083f945066ddf43f74e48bf09449a63f247b Mon Sep 17 00:00:00 2001 From: Thomas Lin Pedersen Date: Thu, 16 May 2024 08:05:26 +0200 Subject: [PATCH 2/6] Run revdepcheck --- revdep/README.md | 244 +- revdep/cran.md | 372 +- revdep/failures.md | 10030 ++++++++++++++++++++++++++++++++++++++++--- revdep/problems.md | 2647 +++++++++++- 4 files changed, 12550 insertions(+), 743 deletions(-) diff --git a/revdep/README.md b/revdep/README.md index b6eff473f2..d6c6b43f5e 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,34 +1,222 @@ # Revdeps -## Failed to check (17) +## Failed to check (146) -|package |version |error |warning |note | -|:----------------|:-------|:-----|:-------|:----| -|bayesdfa |1.3.3 |1 | | | -|bmgarch |2.0.0 |1 | | | -|ctsem |3.9.1 |1 | | | -|EcoEnsemble |1.0.5 |1 | | | -|geostan |0.5.4 |1 | | | -|grandR |? | | | | -|multilevelcoda |1.2.3 |1 | | | -|multinma |0.6.1 |1 | | | -|rmsb |1.1-0 |1 | | | -|rstanarm |2.32.1 |1 | | | -|Seurat |? | | | | -|streamDAG |? | | | | -|treestats |1.0.5 |1 | | | -|TriDimRegression |1.0.2 |1 | | | -|triptych |0.1.2 |1 | | | -|ubms |1.2.6 |1 | | | -|valse |0.1-0 |1 | | | +|package |version |error |warning |note | +|:----------------------|:----------|:------|:-------|:----| +|abctools |1.1.7 |1 | | | +|AnanseSeurat |? | | | | +|animalEKF |1.2 |1 | | | +|ANOM |0.5 |1 | | | +|APackOfTheClones |? | | | | +|atRisk |0.1.0 |1 | | | +|AutoScore |1.0.0 |1 | | | +|bayesdfa |1.3.3 |1 | | | +|bayesDP |1.3.6 |1 | | | +|BayesianFactorZoo |0.0.0.2 |1 | | | +|BCClong |1.0.2 |1 | |1 | +|binsreg |1.0 |1 | | | +|bmstdr |0.7.9 |1 | | | +|bspcov |1.0.0 |1 | | | +|CalibrationCurves |2.0.1 |1 | | | +|Canek |? | | | | +|CARBayesST |4.0 |1 | | | +|CaseBasedReasoning |0.3 |1 | | | +|cellpypes |? | | | | +|CGPfunctions |0.6.3 |1 | | | +|CIARA |? | | | | +|ClustAssess |? | | | | +|clustree |? | | | | +|cmprskcoxmsm |0.2.1 |1 | | | +|combiroc |? | | | | +|conos |? | | | | +|contrast |0.24.2 |1 | | | +|countland |? | | | | +|coxed |0.3.3 |1 | | | +|CRMetrics |? | | | | +|csmpv |1.0.3 |1 | | | +|ctsem |3.10.0 |1 | | | +|CytoSimplex |? | | | | +|DepthProc |2.1.5 |1 | | | +|DIscBIO |? | | | | +|DR.SC |? | | | | +|dyngen |? | | | | +|EcoEnsemble |1.0.5 |1 | | | +|ecolottery |1.0.0 |1 | | | +|EpiEstim |2.2-4 |1 | | | +|evolqg |0.3-4 |1 | | | +|ForecastComb |1.3.1 |1 | | | +|gapfill |0.9.6-1 |1 | |1 | +|GeomComb |1.0 |1 | | | +|[geostan](failures.md#geostan)|0.6.1 |__+1__ | |-3 | +|ggrcs |0.3.8 |1 | | | +|ggrisk |1.3 |1 | | | +|ggsector |? | | | | +|gJLS2 |0.2.0 |1 | | | +|grandR |? | | | | +|Greg |2.0.2 |1 | | | +|greport |0.7-4 |1 | | | +|harmony |? | | | | +|hettx |0.1.3 |1 | | | +|hIRT |0.3.0 |1 | | | +|Hmsc |3.0-13 |1 | | | +|iNZightPlots |2.15.3 |1 | | | +|iNZightRegression |1.3.4 |1 | | | +|IRexamples |0.0.4 |1 | | | +|joineRML |0.4.6 |1 | | | +|JWileymisc |1.4.1 |1 | | | +|kmc |0.4-2 |1 | | | +|L2E |2.0 |1 | | | +|llbayesireg |1.0.0 |1 | | | +|LorenzRegression |1.0.0 |1 | | | +|lsirm12pl |1.3.1 |1 | | | +|mbsts |3.0 |1 | | | +|MendelianRandomization |0.10.0 |1 | | | +|MetabolicSurv |1.1.2 |1 | | | +|miWQS |0.4.4 |1 | | | +|mlmts |1.1.1 |1 | | | +|MRZero |0.2.0 |1 | | | +|Multiaovbay |0.1.0 |1 | | | +|multilevelTools |0.1.1 |1 | | | +|multinma |0.7.0 |1 | | | +|NCA |4.0.1 |1 | | | +|netcmc |1.0.2 |1 | | | +|NetworkChange |0.8 |1 | | | +|nlmeVPC |2.6 |1 | | | +|NMADiagT |0.1.2 |1 | | | +|optweight |0.2.5 |1 | | | +|OVtool |1.0.3 |1 | | | +|paths |0.1.1 |1 | | | +|PLMIX |2.1.1 |1 | | | +|popstudy |1.0.1 |1 | | | +|pould |1.0.1 |1 | | | +|powerly |1.8.6 |1 | | | +|pre |1.0.7 |1 | | | +|PRECAST |? | | | | +|ProFAST |? | | | | +|pscore |0.4.0 |1 | | | +|psfmi |1.4.0 |1 | | | +|qreport |1.0-0 |1 | | | +|qris |1.1.1 |1 | | | +|qte |1.3.1 |1 | | | +|quid |0.0.1 |1 | | | +|RATest |0.1.10 |1 | | | +|RcmdrPlugin.RiskDemo |3.2 |1 | | | +|rddtools |1.6.0 |1 | | | +|riskRegression |2023.12.21 |1 | | | +|rliger |? | | | | +|rms |6.8-0 |1 | |1 | +|rmsb |1.1-0 |1 | | | +|robmed |1.0.2 |1 | | | +|robmedExtra |0.1.0 |1 | | | +|RPPanalyzer |1.4.9 |1 | | | +|rstanarm |2.32.1 |1 | | | +|scCustomize |? | | | | +|SCdeconR |? | | | | +|scDiffCom |? | | | | +|scGate |? | | | | +|scMappR |? | | | | +|SCORPIUS |? | | | | +|scpoisson |? | | | | +|SCpubr |? | | | | +|scRNAstat |? | | | | +|sectorgap |0.1.0 |1 | | | +|SEERaBomb |2019.2 |1 | | | +|semicmprskcoxmsm |0.2.0 |1 | | | +|SensMap |0.7 |1 | | | +|Signac |? | | | | +|SimplyAgree |0.2.0 |1 | | | +|sMSROC |0.1.2 |1 | | | +|SNPassoc |2.1-0 |1 | | | +|snplinkage |? | | | | +|SoupX |? | | | | +|SpaDES.core |2.0.5 |1 | | | +|sparsereg |1.2 |1 | | | +|SPECK |? | | | | +|spikeSlabGAM |1.1-19 |1 | | | +|statsr |0.3.0 |1 | | | +|streamDAG |? | | | | +|survHE |2.0.1 |1 | |1 | +|survidm |1.3.2 |1 | | | +|tempted |0.1.1 |1 | | | +|[tidydr](failures.md#tidydr)|0.0.5 |__+1__ | | | +|tidyEdSurvey |0.1.3 |1 | | | +|tidyseurat |? | | | | +|tidyvpc |1.5.1 |1 | | | +|treefit |? | | | | +|TriDimRegression |1.0.2 |1 | | | +|TSrepr |1.1.0 |1 | | | +|twang |2.6 |1 | | | +|valse |0.1-0 |1 | | | +|vdg |1.2.3 |1 | | | +|WRTDStidal |1.1.4 |1 | | | -## New problems (5) +## New problems (64) -|package |version |error |warning |note | -|:----------------------|:-------|:------|:-------|:------| -|[ggh4x](problems.md#ggh4x)|0.2.8 |__+3__ | | | -|[MplusAutomation](problems.md#mplusautomation)|1.1.1 | | |__+1__ | -|[PlasmaMutationDetector](problems.md#plasmamutationdetector)|1.7.2 | | |__+1__ | -|[Superpower](problems.md#superpower)|0.2.0 |__+1__ | |1 | -|[xaringanthemer](problems.md#xaringanthemer)|0.4.2 |__+1__ | | | +|package |version |error |warning |note | +|:---------------|:--------|:--------|:--------|:--------| +|[asmbPLS](problems.md#asmbpls)|1.0.0 | |__+1__ |1 | +|[bdl](problems.md#bdl)|1.0.5 | |__+1__ | | +|[bdscale](problems.md#bdscale)|2.0.0 |__+1__ | |__+1__ | +|[biclustermd](problems.md#biclustermd)|0.2.3 |__+1__ | |1 | +|[brolgar](problems.md#brolgar)|1.0.1 |__+2__ | |__+1__ | +|[bSi](problems.md#bsi)|1.0.0 | |__+1__ | | +|[CausalImpact](problems.md#causalimpact)|1.3.0 |__+2__ | |__+1__ | +|[ClusROC](problems.md#clusroc)|1.0.2 | |__+1__ | | +|[clustEff](problems.md#clusteff)|0.3.1 | |__+1__ | | +|[CLVTools](problems.md#clvtools)|0.10.0 |__+1__ | |1 __+1__ | +|[coda4microbiome](problems.md#coda4microbiome)|0.2.3 | |__+1__ | | +|[CompAREdesign](problems.md#comparedesign)|2.3.1 | |__+1__ | | +|[covidcast](problems.md#covidcast)|0.5.2 |__+2__ | |1 __+1__ | +|[Coxmos](problems.md#coxmos)|1.0.2 |1 |__+1__ |1 | +|[csa](problems.md#csa)|0.7.1 | |__+1__ | | +|[deeptime](problems.md#deeptime)|1.1.1 |__+2__ | | | +|[DEGRE](problems.md#degre)|0.2.0 | |__+1__ | | +|[did](problems.md#did)|2.1.2 | |1 __+1__ | | +|[EpiCurve](problems.md#epicurve)|2.4-2 |__+1__ | |1 __+1__ | +|[epiR](problems.md#epir)|2.0.74 |__+1__ | |__+1__ | +|[FuncNN](problems.md#funcnn)|1.0 | |__+1__ |1 | +|[ggedit](problems.md#ggedit)|0.4.1 |__+1__ | | | +|[ggfixest](problems.md#ggfixest)|0.1.0 |1 __+1__ | | | +|[ggfortify](problems.md#ggfortify)|0.4.17 | | |__+1__ | +|[ggh4x](problems.md#ggh4x)|0.2.8 |1 __+2__ | |__+1__ | +|[ggheatmap](problems.md#ggheatmap)|2.2 | |__+1__ | | +|[ggScatRidges](problems.md#ggscatridges)|0.1.1 | |__+1__ | | +|[GimmeMyPlot](problems.md#gimmemyplot)|0.1.0 | |__+1__ | | +|[hilldiv](problems.md#hilldiv)|1.5.1 | |__+1__ | | +|[hJAM](problems.md#hjam)|1.0.0 | |__+1__ | | +|[iglu](problems.md#iglu)|4.0.0 |__+2__ | |__+1__ | +|[ImFoR](problems.md#imfor)|0.1.0 | |__+1__ | | +|[iNEXT.4steps](problems.md#inext4steps)|1.0.0 | |__+1__ | | +|[insane](problems.md#insane)|1.0.3 | |__+1__ | | +|[MarketMatching](problems.md#marketmatching)|1.2.1 |__+1__ | | | +|[mc2d](problems.md#mc2d)|0.2.0 | |__+1__ |1 | +|[MetaIntegrator](problems.md#metaintegrator)|2.1.3 | |__+1__ |2 | +|[MF.beta4](problems.md#mfbeta4)|1.0.3 | |1 __+1__ | | +|[MIMSunit](problems.md#mimsunit)|0.11.2 |__+1__ | | | +|[missingHE](problems.md#missinghe)|1.5.0 | |__+1__ |1 | +|[MSPRT](problems.md#msprt)|3.0 | |__+1__ |1 | +|[nzelect](problems.md#nzelect)|0.4.0 |__+1__ | |2 | +|[OenoKPM](problems.md#oenokpm)|2.4.1 | |__+1__ | | +|[posologyr](problems.md#posologyr)|1.2.4 |__+1__ | | | +|[qicharts](problems.md#qicharts)|0.5.8 |__+1__ | | | +|[qicharts2](problems.md#qicharts2)|0.7.5 |__+1__ | |__+1__ | +|[QuadratiK](problems.md#quadratik)|1.1.0 | |__+1__ |1 | +|[RCTrep](problems.md#rctrep)|1.2.0 | |__+1__ | | +|[scdtb](problems.md#scdtb)|0.1.0 |__+1__ | | | +|[SCOUTer](problems.md#scouter)|1.0.0 | |__+1__ | | +|[sievePH](problems.md#sieveph)|1.0.4 | |__+1__ | | +|[SouthParkRshiny](problems.md#southparkrshiny)|1.0.0 | |__+1__ |2 | +|[SqueakR](problems.md#squeakr)|1.3.0 |1 |__+1__ |1 | +|[survminer](problems.md#survminer)|0.4.9 | |__+1__ |1 | +|[symptomcheckR](problems.md#symptomcheckr)|0.1.3 | |__+1__ | | +|[tcgaViz](problems.md#tcgaviz)|1.0.2 | |__+1__ | | +|[TestGardener](problems.md#testgardener)|3.3.3 | |__+1__ | | +|[tis](problems.md#tis)|1.39 |__+1__ | |1 | +|[UniprotR](problems.md#uniprotr)|2.4.0 | |__+1__ | | +|[VALERIE](problems.md#valerie)|1.1.0 | |__+1__ |1 | +|[vannstats](problems.md#vannstats)|1.3.4.14 | |__+1__ | | +|[vici](problems.md#vici)|0.7.3 | |__+1__ | | +|[Wats](problems.md#wats)|1.0.1 |__+2__ | |__+1__ | +|[xaringanthemer](problems.md#xaringanthemer)|0.4.2 |1 __+1__ | | | diff --git a/revdep/cran.md b/revdep/cran.md index ff60632977..f1da4a685a 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,48 +1,370 @@ ## revdepcheck results -We checked 5021 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. +We checked 5034 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. - * We saw 5 new problems - * We failed to check 17 packages + * We saw 64 new problems + * We failed to check 146 packages Issues with CRAN packages are summarised below. ### New problems (This reports the first line of each new failure) +* asmbPLS + checking whether package ‘asmbPLS’ can be installed ... WARNING + +* bdl + checking whether package ‘bdl’ can be installed ... WARNING + +* bdscale + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* biclustermd + checking tests ... ERROR + +* brolgar + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* bSi + checking whether package ‘bSi’ can be installed ... WARNING + +* CausalImpact + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* ClusROC + checking whether package ‘ClusROC’ can be installed ... WARNING + +* clustEff + checking whether package ‘clustEff’ can be installed ... WARNING + +* CLVTools + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* coda4microbiome + checking whether package ‘coda4microbiome’ can be installed ... WARNING + +* CompAREdesign + checking whether package ‘CompAREdesign’ can be installed ... WARNING + +* covidcast + checking tests ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* Coxmos + checking Rd files ... WARNING + +* csa + checking whether package ‘csa’ can be installed ... WARNING + +* deeptime + checking examples ... ERROR + checking tests ... ERROR + +* DEGRE + checking whether package ‘DEGRE’ can be installed ... WARNING + +* did + checking whether package ‘did’ can be installed ... WARNING + +* EpiCurve + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* epiR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* FuncNN + checking whether package ‘FuncNN’ can be installed ... WARNING + +* ggedit + checking examples ... ERROR + +* ggfixest + checking tests ... ERROR + +* ggfortify + checking re-building of vignette outputs ... NOTE + * ggh4x checking examples ... ERROR checking tests ... ERROR + checking re-building of vignette outputs ... NOTE + +* ggheatmap + checking whether package ‘ggheatmap’ can be installed ... WARNING + +* ggScatRidges + checking whether package ‘ggScatRidges’ can be installed ... WARNING + +* GimmeMyPlot + checking whether package ‘GimmeMyPlot’ can be installed ... WARNING + +* hilldiv + checking whether package ‘hilldiv’ can be installed ... WARNING + +* hJAM + checking whether package ‘hJAM’ can be installed ... WARNING + +* iglu + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* ImFoR + checking whether package ‘ImFoR’ can be installed ... WARNING + +* iNEXT.4steps + checking whether package ‘iNEXT.4steps’ can be installed ... WARNING + +* insane + checking whether package ‘insane’ can be installed ... WARNING + +* MarketMatching checking re-building of vignette outputs ... ERROR -* MplusAutomation - checking installed package size ... NOTE +* mc2d + checking whether package ‘mc2d’ can be installed ... WARNING + +* MetaIntegrator + checking whether package ‘MetaIntegrator’ can be installed ... WARNING + +* MF.beta4 + checking whether package ‘MF.beta4’ can be installed ... WARNING + +* MIMSunit + checking examples ... ERROR + +* missingHE + checking whether package ‘missingHE’ can be installed ... WARNING + +* MSPRT + checking whether package ‘MSPRT’ can be installed ... WARNING + +* nzelect + checking examples ... ERROR + +* OenoKPM + checking whether package ‘OenoKPM’ can be installed ... WARNING + +* posologyr + checking running R code from vignettes ... ERROR + +* qicharts + checking examples ... ERROR + +* qicharts2 + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + +* QuadratiK + checking whether package ‘QuadratiK’ can be installed ... WARNING -* PlasmaMutationDetector - checking installed package size ... NOTE +* RCTrep + checking whether package ‘RCTrep’ can be installed ... WARNING -* Superpower +* scdtb checking tests ... ERROR +* SCOUTer + checking whether package ‘SCOUTer’ can be installed ... WARNING + +* sievePH + checking whether package ‘sievePH’ can be installed ... WARNING + +* SouthParkRshiny + checking whether package ‘SouthParkRshiny’ can be installed ... WARNING + +* SqueakR + checking whether package ‘SqueakR’ can be installed ... WARNING + +* survminer + checking whether package ‘survminer’ can be installed ... WARNING + +* symptomcheckR + checking whether package ‘symptomcheckR’ can be installed ... WARNING + +* tcgaViz + checking whether package ‘tcgaViz’ can be installed ... WARNING + +* TestGardener + checking whether package ‘TestGardener’ can be installed ... WARNING + +* tis + checking examples ... ERROR + +* UniprotR + checking whether package ‘UniprotR’ can be installed ... WARNING + +* VALERIE + checking whether package ‘VALERIE’ can be installed ... WARNING + +* vannstats + checking whether package ‘vannstats’ can be installed ... WARNING + +* vici + checking whether package ‘vici’ can be installed ... WARNING + +* Wats + checking examples ... ERROR + checking running R code from vignettes ... ERROR + checking re-building of vignette outputs ... NOTE + * xaringanthemer checking tests ... ERROR ### Failed to check -* bayesdfa (NA) -* bmgarch (NA) -* ctsem (NA) -* EcoEnsemble (NA) -* geostan (NA) -* grandR (NA) -* multilevelcoda (NA) -* multinma (NA) -* rmsb (NA) -* rstanarm (NA) -* Seurat (NA) -* streamDAG (NA) -* treestats (NA) -* TriDimRegression (NA) -* triptych (NA) -* ubms (NA) -* valse (NA) +* abctools (NA) +* AnanseSeurat (NA) +* animalEKF (NA) +* ANOM (NA) +* APackOfTheClones (NA) +* atRisk (NA) +* AutoScore (NA) +* bayesdfa (NA) +* bayesDP (NA) +* BayesianFactorZoo (NA) +* BCClong (NA) +* binsreg (NA) +* bmstdr (NA) +* bspcov (NA) +* CalibrationCurves (NA) +* Canek (NA) +* CARBayesST (NA) +* CaseBasedReasoning (NA) +* cellpypes (NA) +* CGPfunctions (NA) +* CIARA (NA) +* ClustAssess (NA) +* clustree (NA) +* cmprskcoxmsm (NA) +* combiroc (NA) +* conos (NA) +* contrast (NA) +* countland (NA) +* coxed (NA) +* CRMetrics (NA) +* csmpv (NA) +* ctsem (NA) +* CytoSimplex (NA) +* DepthProc (NA) +* DIscBIO (NA) +* DR.SC (NA) +* dyngen (NA) +* EcoEnsemble (NA) +* ecolottery (NA) +* EpiEstim (NA) +* evolqg (NA) +* ForecastComb (NA) +* gapfill (NA) +* GeomComb (NA) +* geostan (NA) +* ggrcs (NA) +* ggrisk (NA) +* ggsector (NA) +* gJLS2 (NA) +* grandR (NA) +* Greg (NA) +* greport (NA) +* harmony (NA) +* hettx (NA) +* hIRT (NA) +* Hmsc (NA) +* iNZightPlots (NA) +* iNZightRegression (NA) +* IRexamples (NA) +* joineRML (NA) +* JWileymisc (NA) +* kmc (NA) +* L2E (NA) +* llbayesireg (NA) +* LorenzRegression (NA) +* lsirm12pl (NA) +* mbsts (NA) +* MendelianRandomization (NA) +* MetabolicSurv (NA) +* miWQS (NA) +* mlmts (NA) +* MRZero (NA) +* Multiaovbay (NA) +* multilevelTools (NA) +* multinma (NA) +* NCA (NA) +* netcmc (NA) +* NetworkChange (NA) +* nlmeVPC (NA) +* NMADiagT (NA) +* optweight (NA) +* OVtool (NA) +* paths (NA) +* PLMIX (NA) +* popstudy (NA) +* pould (NA) +* powerly (NA) +* pre (NA) +* PRECAST (NA) +* ProFAST (NA) +* pscore (NA) +* psfmi (NA) +* qreport (NA) +* qris (NA) +* qte (NA) +* quid (NA) +* RATest (NA) +* RcmdrPlugin.RiskDemo (NA) +* rddtools (NA) +* riskRegression (NA) +* rliger (NA) +* rms (NA) +* rmsb (NA) +* robmed (NA) +* robmedExtra (NA) +* RPPanalyzer (NA) +* rstanarm (NA) +* scCustomize (NA) +* SCdeconR (NA) +* scDiffCom (NA) +* scGate (NA) +* scMappR (NA) +* SCORPIUS (NA) +* scpoisson (NA) +* SCpubr (NA) +* scRNAstat (NA) +* sectorgap (NA) +* SEERaBomb (NA) +* semicmprskcoxmsm (NA) +* SensMap (NA) +* Signac (NA) +* SimplyAgree (NA) +* sMSROC (NA) +* SNPassoc (NA) +* snplinkage (NA) +* SoupX (NA) +* SpaDES.core (NA) +* sparsereg (NA) +* SPECK (NA) +* spikeSlabGAM (NA) +* statsr (NA) +* streamDAG (NA) +* survHE (NA) +* survidm (NA) +* tempted (NA) +* tidydr (NA) +* tidyEdSurvey (NA) +* tidyseurat (NA) +* tidyvpc (NA) +* treefit (NA) +* TriDimRegression (NA) +* TSrepr (NA) +* twang (NA) +* valse (NA) +* vdg (NA) +* WRTDStidal (NA) diff --git a/revdep/failures.md b/revdep/failures.md index ca00cbc9ae..5eb2ead6c6 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -1,23 +1,23 @@ -# bayesdfa +# abctools
-* Version: 1.3.3 -* GitHub: https://github.com/fate-ewi/bayesdfa -* Source code: https://github.com/cran/bayesdfa -* Date/Publication: 2024-02-26 20:50:06 UTC -* Number of recursive dependencies: 89 +* Version: 1.1.7 +* GitHub: https://github.com/dennisprangle/abctools +* Source code: https://github.com/cran/abctools +* Date/Publication: 2023-09-18 10:40:02 UTC +* Number of recursive dependencies: 75 -Run `revdepcheck::cloud_details(, "bayesdfa")` for more info +Run `revdepcheck::cloud_details(, "abctools")` for more info
## In both -* checking whether package ‘bayesdfa’ can be installed ... ERROR +* checking whether package ‘abctools’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/abctools/new/abctools.Rcheck/00install.out’ for details. ``` ## Installation @@ -25,77 +25,147 @@ Run `revdepcheck::cloud_details(, "bayesdfa")` for more info ### Devel ``` -* installing *source* package ‘bayesdfa’ ... -** package ‘bayesdfa’ successfully unpacked and MD5 sums checked +* installing *source* package ‘abctools’ ... +** package ‘abctools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_dfa.o] Error 1 -ERROR: compilation failed for package ‘bayesdfa’ -* removing ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/bayesdfa’ +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c abctools.c -o abctools.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o abctools.so abctools.o init.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/abctools/new/abctools.Rcheck/00LOCK-abctools/00new/abctools/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘abctools’ +* removing ‘/tmp/workdir/abctools/new/abctools.Rcheck/abctools’ ``` ### CRAN ``` -* installing *source* package ‘bayesdfa’ ... -** package ‘bayesdfa’ successfully unpacked and MD5 sums checked +* installing *source* package ‘abctools’ ... +** package ‘abctools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c abctools.c -o abctools.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o abctools.so abctools.o init.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/abctools/old/abctools.Rcheck/00LOCK-abctools/00new/abctools/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘abctools’ +* removing ‘/tmp/workdir/abctools/old/abctools.Rcheck/abctools’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +``` +# AnanseSeurat + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/JGASmits/AnanseSeurat +* Source code: https://github.com/cran/AnanseSeurat +* Date/Publication: 2023-11-11 21:43:17 UTC +* Number of recursive dependencies: 201 + +Run `revdepcheck::cloud_details(, "AnanseSeurat")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/AnanseSeurat/new/AnanseSeurat.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘AnanseSeurat/DESCRIPTION’ ... OK ... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_dfa.o] Error 1 -ERROR: compilation failed for package ‘bayesdfa’ -* removing ‘/tmp/workdir/bayesdfa/old/bayesdfa.Rcheck/bayesdfa’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +Package suggested but not available for checking: ‘Signac’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/AnanseSeurat/old/AnanseSeurat.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘AnanseSeurat/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +Package suggested but not available for checking: ‘Signac’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` -# bmgarch +# animalEKF
-* Version: 2.0.0 -* GitHub: https://github.com/ph-rast/bmgarch -* Source code: https://github.com/cran/bmgarch -* Date/Publication: 2023-09-12 00:40:02 UTC -* Number of recursive dependencies: 82 +* Version: 1.2 +* GitHub: NA +* Source code: https://github.com/cran/animalEKF +* Date/Publication: 2023-09-29 15:32:41 UTC +* Number of recursive dependencies: 76 -Run `revdepcheck::cloud_details(, "bmgarch")` for more info +Run `revdepcheck::cloud_details(, "animalEKF")` for more info
## In both -* checking whether package ‘bmgarch’ can be installed ... ERROR +* checking whether package ‘animalEKF’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/animalEKF/new/animalEKF.Rcheck/00install.out’ for details. ``` ## Installation @@ -103,77 +173,61 @@ Run `revdepcheck::cloud_details(, "bmgarch")` for more info ### Devel ``` -* installing *source* package ‘bmgarch’ ... -** package ‘bmgarch’ successfully unpacked and MD5 sums checked +* installing *source* package ‘animalEKF’ ... +** package ‘animalEKF’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_DCCMGARCH_namespace::model_DCCMGARCH; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_DCCMGARCH.o] Error 1 -ERROR: compilation failed for package ‘bmgarch’ -* removing ‘/tmp/workdir/bmgarch/new/bmgarch.Rcheck/bmgarch’ +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘animalEKF’ +* removing ‘/tmp/workdir/animalEKF/new/animalEKF.Rcheck/animalEKF’ ``` ### CRAN ``` -* installing *source* package ‘bmgarch’ ... -** package ‘bmgarch’ successfully unpacked and MD5 sums checked +* installing *source* package ‘animalEKF’ ... +** package ‘animalEKF’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_DCCMGARCH_namespace::model_DCCMGARCH; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_DCCMGARCH.o] Error 1 -ERROR: compilation failed for package ‘bmgarch’ -* removing ‘/tmp/workdir/bmgarch/old/bmgarch.Rcheck/bmgarch’ +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘animalEKF’ +* removing ‘/tmp/workdir/animalEKF/old/animalEKF.Rcheck/animalEKF’ ``` -# ctsem +# ANOM
-* Version: 3.9.1 -* GitHub: https://github.com/cdriveraus/ctsem -* Source code: https://github.com/cran/ctsem -* Date/Publication: 2023-10-30 14:20:02 UTC -* Number of recursive dependencies: 143 +* Version: 0.5 +* GitHub: https://github.com/PhilipPallmann/ANOM +* Source code: https://github.com/cran/ANOM +* Date/Publication: 2017-04-12 13:32:33 UTC +* Number of recursive dependencies: 77 -Run `revdepcheck::cloud_details(, "ctsem")` for more info +Run `revdepcheck::cloud_details(, "ANOM")` for more info
## In both -* checking whether package ‘ctsem’ can be installed ... ERROR +* checking whether package ‘ANOM’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/ANOM/new/ANOM.Rcheck/00install.out’ for details. ``` ## Installation @@ -181,77 +235,139 @@ Run `revdepcheck::cloud_details(, "ctsem")` for more info ### Devel ``` -* installing *source* package ‘ctsem’ ... -** package ‘ctsem’ successfully unpacked and MD5 sums checked +* installing *source* package ‘ANOM’ ... +** package ‘ANOM’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ANOM’ +* removing ‘/tmp/workdir/ANOM/new/ANOM.Rcheck/ANOM’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +``` +### CRAN + +``` +* installing *source* package ‘ANOM’ ... +** package ‘ANOM’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ANOM’ +* removing ‘/tmp/workdir/ANOM/old/ANOM.Rcheck/ANOM’ + + +``` +# APackOfTheClones + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/Qile0317/APackOfTheClones +* Source code: https://github.com/cran/APackOfTheClones +* Date/Publication: 2024-04-16 09:50:02 UTC +* Number of recursive dependencies: 176 + +Run `revdepcheck::cloud_details(, "APackOfTheClones")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/APackOfTheClones/new/APackOfTheClones.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘APackOfTheClones/DESCRIPTION’ ... OK ... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 -ERROR: compilation failed for package ‘ctsem’ -* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’ +* this is package ‘APackOfTheClones’ version ‘1.2.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'Seurat', 'SeuratObject' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + ``` ### CRAN ``` -* installing *source* package ‘ctsem’ ... -** package ‘ctsem’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 +* using log directory ‘/tmp/workdir/APackOfTheClones/old/APackOfTheClones.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘APackOfTheClones/DESCRIPTION’ ... OK +... +* this is package ‘APackOfTheClones’ version ‘1.2.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'Seurat', 'SeuratObject' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 -ERROR: compilation failed for package ‘ctsem’ -* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’ ``` -# EcoEnsemble +# atRisk
-* Version: 1.0.5 +* Version: 0.1.0 * GitHub: NA -* Source code: https://github.com/cran/EcoEnsemble -* Date/Publication: 2023-09-18 11:50:02 UTC -* Number of recursive dependencies: 91 +* Source code: https://github.com/cran/atRisk +* Date/Publication: 2023-08-08 14:50:05 UTC +* Number of recursive dependencies: 37 -Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info +Run `revdepcheck::cloud_details(, "atRisk")` for more info
## In both -* checking whether package ‘EcoEnsemble’ can be installed ... ERROR +* checking whether package ‘atRisk’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/atRisk/new/atRisk.Rcheck/00install.out’ for details. ``` ## Installation @@ -259,77 +375,8629 @@ Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info ### Devel ``` -* installing *source* package ‘EcoEnsemble’ ... -** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked +* installing *source* package ‘atRisk’ ... +** package ‘atRisk’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘atRisk’ +* removing ‘/tmp/workdir/atRisk/new/atRisk.Rcheck/atRisk’ -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_namespace::model_ensemble_model; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model.o] Error 1 -ERROR: compilation failed for package ‘EcoEnsemble’ -* removing ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/EcoEnsemble’ +``` +### CRAN + +``` +* installing *source* package ‘atRisk’ ... +** package ‘atRisk’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘atRisk’ +* removing ‘/tmp/workdir/atRisk/old/atRisk.Rcheck/atRisk’ + + +``` +# AutoScore + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/nliulab/AutoScore +* Source code: https://github.com/cran/AutoScore +* Date/Publication: 2022-10-15 22:15:26 UTC +* Number of recursive dependencies: 180 + +Run `revdepcheck::cloud_details(, "AutoScore")` for more info + +
+ +## In both + +* checking whether package ‘AutoScore’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/AutoScore/new/AutoScore.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘AutoScore’ ... +** package ‘AutoScore’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘AutoScore’ +* removing ‘/tmp/workdir/AutoScore/new/AutoScore.Rcheck/AutoScore’ + + +``` +### CRAN + +``` +* installing *source* package ‘AutoScore’ ... +** package ‘AutoScore’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘AutoScore’ +* removing ‘/tmp/workdir/AutoScore/old/AutoScore.Rcheck/AutoScore’ + + +``` +# bayesdfa + +
+ +* Version: 1.3.3 +* GitHub: https://github.com/fate-ewi/bayesdfa +* Source code: https://github.com/cran/bayesdfa +* Date/Publication: 2024-02-26 20:50:06 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "bayesdfa")` for more info + +
+ +## In both + +* checking whether package ‘bayesdfa’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘bayesdfa’ ... +** package ‘bayesdfa’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_dfa.o] Error 1 +ERROR: compilation failed for package ‘bayesdfa’ +* removing ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/bayesdfa’ + + +``` +### CRAN + +``` +* installing *source* package ‘bayesdfa’ ... +** package ‘bayesdfa’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_dfa.o] Error 1 +ERROR: compilation failed for package ‘bayesdfa’ +* removing ‘/tmp/workdir/bayesdfa/old/bayesdfa.Rcheck/bayesdfa’ + + +``` +# bayesDP + +
+ +* Version: 1.3.6 +* GitHub: https://github.com/graemeleehickey/bayesDP +* Source code: https://github.com/cran/bayesDP +* Date/Publication: 2022-01-30 22:20:02 UTC +* Number of recursive dependencies: 80 + +Run `revdepcheck::cloud_details(, "bayesDP")` for more info + +
+ +## In both + +* checking whether package ‘bayesDP’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bayesDP/new/bayesDP.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘bayesDP’ ... +** package ‘bayesDP’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c bdplm.cpp -o bdplm.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c ppexp.cpp -o ppexp.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bayesDP.so RcppExports.o bdplm.o ppexp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/bayesDP/new/bayesDP.Rcheck/00LOCK-bayesDP/00new/bayesDP/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bayesDP’ +* removing ‘/tmp/workdir/bayesDP/new/bayesDP.Rcheck/bayesDP’ + + +``` +### CRAN + +``` +* installing *source* package ‘bayesDP’ ... +** package ‘bayesDP’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c bdplm.cpp -o bdplm.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c ppexp.cpp -o ppexp.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bayesDP.so RcppExports.o bdplm.o ppexp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/bayesDP/old/bayesDP.Rcheck/00LOCK-bayesDP/00new/bayesDP/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bayesDP’ +* removing ‘/tmp/workdir/bayesDP/old/bayesDP.Rcheck/bayesDP’ + + +``` +# BayesianFactorZoo + +
+ +* Version: 0.0.0.2 +* GitHub: NA +* Source code: https://github.com/cran/BayesianFactorZoo +* Date/Publication: 2023-11-14 12:43:44 UTC +* Number of recursive dependencies: 75 + +Run `revdepcheck::cloud_details(, "BayesianFactorZoo")` for more info + +
+ +## In both + +* checking whether package ‘BayesianFactorZoo’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/BayesianFactorZoo/new/BayesianFactorZoo.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BayesianFactorZoo’ ... +** package ‘BayesianFactorZoo’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BayesianFactorZoo’ +* removing ‘/tmp/workdir/BayesianFactorZoo/new/BayesianFactorZoo.Rcheck/BayesianFactorZoo’ + + +``` +### CRAN + +``` +* installing *source* package ‘BayesianFactorZoo’ ... +** package ‘BayesianFactorZoo’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BayesianFactorZoo’ +* removing ‘/tmp/workdir/BayesianFactorZoo/old/BayesianFactorZoo.Rcheck/BayesianFactorZoo’ + + +``` +# BCClong + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/BCClong +* Date/Publication: 2024-02-05 11:50:06 UTC +* Number of recursive dependencies: 142 + +Run `revdepcheck::cloud_details(, "BCClong")` for more info + +
+ +## In both + +* checking whether package ‘BCClong’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/BCClong/new/BCClong.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘joineRML’ + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘BCClong’ ... +** package ‘BCClong’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BCC.cpp -o BCC.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Likelihood.cpp -o Likelihood.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c c_which.cpp -o c_which.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BCClong.so BCC.o Likelihood.o RcppExports.o c_which.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +... +installing to /tmp/workdir/BCClong/new/BCClong.Rcheck/00LOCK-BCClong/00new/BCClong/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BCClong’ +* removing ‘/tmp/workdir/BCClong/new/BCClong.Rcheck/BCClong’ + + +``` +### CRAN + +``` +* installing *source* package ‘BCClong’ ... +** package ‘BCClong’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BCC.cpp -o BCC.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Likelihood.cpp -o Likelihood.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c c_which.cpp -o c_which.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BCClong.so BCC.o Likelihood.o RcppExports.o c_which.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +... +installing to /tmp/workdir/BCClong/old/BCClong.Rcheck/00LOCK-BCClong/00new/BCClong/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘BCClong’ +* removing ‘/tmp/workdir/BCClong/old/BCClong.Rcheck/BCClong’ + + +``` +# binsreg + +
+ +* Version: 1.0 +* GitHub: NA +* Source code: https://github.com/cran/binsreg +* Date/Publication: 2023-07-11 12:00:24 UTC +* Number of recursive dependencies: 35 + +Run `revdepcheck::cloud_details(, "binsreg")` for more info + +
+ +## In both + +* checking whether package ‘binsreg’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/binsreg/new/binsreg.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘binsreg’ ... +** package ‘binsreg’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘binsreg’ +* removing ‘/tmp/workdir/binsreg/new/binsreg.Rcheck/binsreg’ + + +``` +### CRAN + +``` +* installing *source* package ‘binsreg’ ... +** package ‘binsreg’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘binsreg’ +* removing ‘/tmp/workdir/binsreg/old/binsreg.Rcheck/binsreg’ + + +``` +# bmstdr + +
+ +* Version: 0.7.9 +* GitHub: https://github.com/sujit-sahu/bmstdr +* Source code: https://github.com/cran/bmstdr +* Date/Publication: 2023-12-18 15:00:02 UTC +* Number of recursive dependencies: 212 + +Run `revdepcheck::cloud_details(, "bmstdr")` for more info + +
+ +## In both + +* checking whether package ‘bmstdr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bmstdr/new/bmstdr.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘bmstdr’ ... +** package ‘bmstdr’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bmstdr’ +* removing ‘/tmp/workdir/bmstdr/new/bmstdr.Rcheck/bmstdr’ + + +``` +### CRAN + +``` +* installing *source* package ‘bmstdr’ ... +** package ‘bmstdr’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bmstdr’ +* removing ‘/tmp/workdir/bmstdr/old/bmstdr.Rcheck/bmstdr’ + + +``` +# bspcov + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/statjs/bspcov +* Source code: https://github.com/cran/bspcov +* Date/Publication: 2024-02-06 16:50:08 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "bspcov")` for more info + +
+ +## In both + +* checking whether package ‘bspcov’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bspcov/new/bspcov.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘bspcov’ ... +** package ‘bspcov’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bspcov’ +* removing ‘/tmp/workdir/bspcov/new/bspcov.Rcheck/bspcov’ + + +``` +### CRAN + +``` +* installing *source* package ‘bspcov’ ... +** package ‘bspcov’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘bspcov’ +* removing ‘/tmp/workdir/bspcov/old/bspcov.Rcheck/bspcov’ + + +``` +# CalibrationCurves + +
+ +* Version: 2.0.1 +* GitHub: NA +* Source code: https://github.com/cran/CalibrationCurves +* Date/Publication: 2024-03-01 10:12:35 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "CalibrationCurves")` for more info + +
+ +## In both + +* checking whether package ‘CalibrationCurves’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/CalibrationCurves/new/CalibrationCurves.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘CalibrationCurves’ ... +** package ‘CalibrationCurves’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘CalibrationCurves’ +* removing ‘/tmp/workdir/CalibrationCurves/new/CalibrationCurves.Rcheck/CalibrationCurves’ + + +``` +### CRAN + +``` +* installing *source* package ‘CalibrationCurves’ ... +** package ‘CalibrationCurves’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘CalibrationCurves’ +* removing ‘/tmp/workdir/CalibrationCurves/old/CalibrationCurves.Rcheck/CalibrationCurves’ + + +``` +# Canek + +
+ +* Version: 0.2.5 +* GitHub: https://github.com/MartinLoza/Canek +* Source code: https://github.com/cran/Canek +* Date/Publication: 2023-12-08 05:30:02 UTC +* Number of recursive dependencies: 220 + +Run `revdepcheck::cloud_details(, "Canek")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/Canek/new/Canek.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Canek/DESCRIPTION’ ... OK +... + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 74 ] + Error: Test failures + Execution halted +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘toy_example.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 ERROR, 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/Canek/old/Canek.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Canek/DESCRIPTION’ ... OK +... + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 74 ] + Error: Test failures + Execution halted +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘toy_example.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 ERROR, 1 NOTE + + + + + +``` +# CARBayesST + +
+ +* Version: 4.0 +* GitHub: https://github.com/duncanplee/CARBayesST +* Source code: https://github.com/cran/CARBayesST +* Date/Publication: 2023-10-30 16:40:02 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "CARBayesST")` for more info + +
+ +## In both + +* checking whether package ‘CARBayesST’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/CARBayesST/new/CARBayesST.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘CARBayesST’ ... +** package ‘CARBayesST’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CARBayesST.cpp -o CARBayesST.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o CARBayesST.so CARBayesST.o RcppExports.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/CARBayesST/new/CARBayesST.Rcheck/00LOCK-CARBayesST/00new/CARBayesST/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘CARBayesST’ +* removing ‘/tmp/workdir/CARBayesST/new/CARBayesST.Rcheck/CARBayesST’ + + +``` +### CRAN + +``` +* installing *source* package ‘CARBayesST’ ... +** package ‘CARBayesST’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CARBayesST.cpp -o CARBayesST.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o CARBayesST.so CARBayesST.o RcppExports.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/CARBayesST/old/CARBayesST.Rcheck/00LOCK-CARBayesST/00new/CARBayesST/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘CARBayesST’ +* removing ‘/tmp/workdir/CARBayesST/old/CARBayesST.Rcheck/CARBayesST’ + + +``` +# CaseBasedReasoning + +
+ +* Version: 0.3 +* GitHub: https://github.com/sipemu/case-based-reasoning +* Source code: https://github.com/cran/CaseBasedReasoning +* Date/Publication: 2023-05-02 08:40:02 UTC +* Number of recursive dependencies: 106 + +Run `revdepcheck::cloud_details(, "CaseBasedReasoning")` for more info + +
+ +## In both + +* checking whether package ‘CaseBasedReasoning’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/CaseBasedReasoning/new/CaseBasedReasoning.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘CaseBasedReasoning’ ... +** package ‘CaseBasedReasoning’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c distanceAPI.cpp -o distanceAPI.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c distances.cpp -o distances.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c order.cpp -o order.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c weightedKNN.cpp -o weightedKNN.o +... +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o CaseBasedReasoning.so RcppExports.o distanceAPI.o distances.o order.o weightedKNN.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/CaseBasedReasoning/new/CaseBasedReasoning.Rcheck/00LOCK-CaseBasedReasoning/00new/CaseBasedReasoning/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘CaseBasedReasoning’ +* removing ‘/tmp/workdir/CaseBasedReasoning/new/CaseBasedReasoning.Rcheck/CaseBasedReasoning’ + + +``` +### CRAN + +``` +* installing *source* package ‘CaseBasedReasoning’ ... +** package ‘CaseBasedReasoning’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c distanceAPI.cpp -o distanceAPI.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c distances.cpp -o distances.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c order.cpp -o order.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -c weightedKNN.cpp -o weightedKNN.o +... +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o CaseBasedReasoning.so RcppExports.o distanceAPI.o distances.o order.o weightedKNN.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/CaseBasedReasoning/old/CaseBasedReasoning.Rcheck/00LOCK-CaseBasedReasoning/00new/CaseBasedReasoning/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘CaseBasedReasoning’ +* removing ‘/tmp/workdir/CaseBasedReasoning/old/CaseBasedReasoning.Rcheck/CaseBasedReasoning’ + + +``` +# cellpypes + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/FelixTheStudent/cellpypes +* Source code: https://github.com/cran/cellpypes +* Date/Publication: 2024-01-27 07:30:07 UTC +* Number of recursive dependencies: 183 + +Run `revdepcheck::cloud_details(, "cellpypes")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/cellpypes/new/cellpypes.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘cellpypes/DESCRIPTION’ ... OK +... +* checking contents of ‘data’ directory ... OK +* checking data for non-ASCII characters ... OK +* checking LazyData ... OK +* checking data for ASCII and uncompressed saves ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* DONE +Status: 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/cellpypes/old/cellpypes.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘cellpypes/DESCRIPTION’ ... OK +... +* checking contents of ‘data’ directory ... OK +* checking data for non-ASCII characters ... OK +* checking LazyData ... OK +* checking data for ASCII and uncompressed saves ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* DONE +Status: 1 NOTE + + + + + +``` +# CGPfunctions + +
+ +* Version: 0.6.3 +* GitHub: https://github.com/ibecav/CGPfunctions +* Source code: https://github.com/cran/CGPfunctions +* Date/Publication: 2020-11-12 14:50:09 UTC +* Number of recursive dependencies: 158 + +Run `revdepcheck::cloud_details(, "CGPfunctions")` for more info + +
+ +## In both + +* checking whether package ‘CGPfunctions’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘CGPfunctions’ ... +** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘CGPfunctions’ +* removing ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/CGPfunctions’ + + +``` +### CRAN + +``` +* installing *source* package ‘CGPfunctions’ ... +** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘CGPfunctions’ +* removing ‘/tmp/workdir/CGPfunctions/old/CGPfunctions.Rcheck/CGPfunctions’ + + +``` +# CIARA + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/CIARA +* Date/Publication: 2022-02-22 20:00:02 UTC +* Number of recursive dependencies: 181 + +Run `revdepcheck::cloud_details(, "CIARA")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/CIARA/new/CIARA.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘CIARA/DESCRIPTION’ ... OK +... +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘CIARA.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... NOTE +Note: skipping ‘CIARA.Rmd’ due to unavailable dependencies: 'Seurat' +* DONE +Status: 3 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/CIARA/old/CIARA.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘CIARA/DESCRIPTION’ ... OK +... +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘CIARA.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... NOTE +Note: skipping ‘CIARA.Rmd’ due to unavailable dependencies: 'Seurat' +* DONE +Status: 3 NOTEs + + + + + +``` +# ClustAssess + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/Core-Bioinformatics/ClustAssess +* Source code: https://github.com/cran/ClustAssess +* Date/Publication: 2022-01-26 16:52:46 UTC +* Number of recursive dependencies: 164 + +Run `revdepcheck::cloud_details(, "ClustAssess")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/ClustAssess/new/ClustAssess.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ClustAssess/DESCRIPTION’ ... OK +... +--- finished re-building ‘comparing-soft-and-hierarchical.Rmd’ + +SUMMARY: processing the following file failed: + ‘ClustAssess.Rmd’ + +Error: Vignette re-building failed. +Execution halted + +* DONE +Status: 1 ERROR, 1 WARNING, 2 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/ClustAssess/old/ClustAssess.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ClustAssess/DESCRIPTION’ ... OK +... +--- finished re-building ‘comparing-soft-and-hierarchical.Rmd’ + +SUMMARY: processing the following file failed: + ‘ClustAssess.Rmd’ + +Error: Vignette re-building failed. +Execution halted + +* DONE +Status: 1 ERROR, 1 WARNING, 2 NOTEs + + + + + +``` +# clustree + +
+ +* Version: 0.5.1 +* GitHub: https://github.com/lazappi/clustree +* Source code: https://github.com/cran/clustree +* Date/Publication: 2023-11-05 19:10:02 UTC +* Number of recursive dependencies: 192 + +Run `revdepcheck::cloud_details(, "clustree")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/clustree/new/clustree.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘clustree/DESCRIPTION’ ... OK +... +* checking tests ... OK + Running ‘spelling.R’ + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘clustree.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/clustree/old/clustree.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘clustree/DESCRIPTION’ ... OK +... +* checking tests ... OK + Running ‘spelling.R’ + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘clustree.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + +``` +# cmprskcoxmsm + +
+ +* Version: 0.2.1 +* GitHub: NA +* Source code: https://github.com/cran/cmprskcoxmsm +* Date/Publication: 2021-09-04 05:50:02 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "cmprskcoxmsm")` for more info + +
+ +## In both + +* checking whether package ‘cmprskcoxmsm’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/cmprskcoxmsm/new/cmprskcoxmsm.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘cmprskcoxmsm’ ... +** package ‘cmprskcoxmsm’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘cmprskcoxmsm’ +* removing ‘/tmp/workdir/cmprskcoxmsm/new/cmprskcoxmsm.Rcheck/cmprskcoxmsm’ + + +``` +### CRAN + +``` +* installing *source* package ‘cmprskcoxmsm’ ... +** package ‘cmprskcoxmsm’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘cmprskcoxmsm’ +* removing ‘/tmp/workdir/cmprskcoxmsm/old/cmprskcoxmsm.Rcheck/cmprskcoxmsm’ + + +``` +# combiroc + +
+ +* Version: 0.3.4 +* GitHub: https://github.com/ingmbioinfo/combiroc +* Source code: https://github.com/cran/combiroc +* Date/Publication: 2023-07-06 12:53:12 UTC +* Number of recursive dependencies: 160 + +Run `revdepcheck::cloud_details(, "combiroc")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/combiroc/new/combiroc.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘combiroc/DESCRIPTION’ ... OK +... + + When sourcing ‘combiroc_vignette_2.R’: +Error: Cannot find the file(s): "/tmp/RtmpA38BUi/file1c6675fecb04/vignettes/vignettes/atlas_dimplot.png" +Execution halted + + ‘combiroc_vignette_1.Rmd’ using ‘UTF-8’... OK + ‘combiroc_vignette_2.Rmd’ using ‘UTF-8’... failed +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 ERROR, 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/combiroc/old/combiroc.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘combiroc/DESCRIPTION’ ... OK +... + + When sourcing ‘combiroc_vignette_2.R’: +Error: Cannot find the file(s): "/tmp/RtmpD5SHHa/file14446c22f1bc/vignettes/vignettes/atlas_dimplot.png" +Execution halted + + ‘combiroc_vignette_1.Rmd’ using ‘UTF-8’... OK + ‘combiroc_vignette_2.Rmd’ using ‘UTF-8’... failed +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 ERROR, 1 NOTE + + + + + +``` +# conos + +
+ +* Version: 1.5.2 +* GitHub: https://github.com/kharchenkolab/conos +* Source code: https://github.com/cran/conos +* Date/Publication: 2024-02-26 19:30:05 UTC +* Number of recursive dependencies: 239 + +Run `revdepcheck::cloud_details(, "conos")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/conos/new/conos.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘conos/DESCRIPTION’ ... OK +... +* checking for GNU extensions in Makefiles ... OK +* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK +* checking use of PKG_*FLAGS in Makefiles ... OK +* checking compiled code ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* DONE +Status: 2 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/conos/old/conos.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘conos/DESCRIPTION’ ... OK +... +* checking for GNU extensions in Makefiles ... OK +* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK +* checking use of PKG_*FLAGS in Makefiles ... OK +* checking compiled code ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* DONE +Status: 2 NOTEs + + + + + +``` +# contrast + +
+ +* Version: 0.24.2 +* GitHub: https://github.com/Alanocallaghan/contrast +* Source code: https://github.com/cran/contrast +* Date/Publication: 2022-10-05 17:20:09 UTC +* Number of recursive dependencies: 112 + +Run `revdepcheck::cloud_details(, "contrast")` for more info + +
+ +## In both + +* checking whether package ‘contrast’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/contrast/new/contrast.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘contrast’ ... +** package ‘contrast’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘contrast’ +* removing ‘/tmp/workdir/contrast/new/contrast.Rcheck/contrast’ + + +``` +### CRAN + +``` +* installing *source* package ‘contrast’ ... +** package ‘contrast’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘contrast’ +* removing ‘/tmp/workdir/contrast/old/contrast.Rcheck/contrast’ + + +``` +# countland + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/shchurch/countland +* Source code: https://github.com/cran/countland +* Date/Publication: 2024-02-01 18:00:02 UTC +* Number of recursive dependencies: 199 + +Run `revdepcheck::cloud_details(, "countland")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/countland/new/countland.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘countland/DESCRIPTION’ ... OK +... + 1. └─base::loadNamespace(x) at test-countland_subset.R:2:1 + 2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) + 3. └─base (local) withOneRestart(expr, restarts[[1L]]) + 4. └─base (local) doWithOneRestart(return(expr), restart) + + [ FAIL 7 | WARN 0 | SKIP 0 | PASS 13 ] + Error: Test failures + Execution halted +* DONE +Status: 2 ERRORs, 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/countland/old/countland.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘countland/DESCRIPTION’ ... OK +... + 1. └─base::loadNamespace(x) at test-countland_subset.R:2:1 + 2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) + 3. └─base (local) withOneRestart(expr, restarts[[1L]]) + 4. └─base (local) doWithOneRestart(return(expr), restart) + + [ FAIL 7 | WARN 0 | SKIP 0 | PASS 13 ] + Error: Test failures + Execution halted +* DONE +Status: 2 ERRORs, 1 NOTE + + + + + +``` +# coxed + +
+ +* Version: 0.3.3 +* GitHub: https://github.com/jkropko/coxed +* Source code: https://github.com/cran/coxed +* Date/Publication: 2020-08-02 01:20:07 UTC +* Number of recursive dependencies: 109 + +Run `revdepcheck::cloud_details(, "coxed")` for more info + +
+ +## In both + +* checking whether package ‘coxed’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/coxed/new/coxed.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘coxed’ ... +** package ‘coxed’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘coxed’ +* removing ‘/tmp/workdir/coxed/new/coxed.Rcheck/coxed’ + + +``` +### CRAN + +``` +* installing *source* package ‘coxed’ ... +** package ‘coxed’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘rms’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘coxed’ +* removing ‘/tmp/workdir/coxed/old/coxed.Rcheck/coxed’ + + +``` +# CRMetrics + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/khodosevichlab/CRMetrics +* Source code: https://github.com/cran/CRMetrics +* Date/Publication: 2023-09-01 09:00:06 UTC +* Number of recursive dependencies: 235 + +Run `revdepcheck::cloud_details(, "CRMetrics")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/CRMetrics/new/CRMetrics.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘CRMetrics/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘ggpmisc’ + +Package suggested but not available for checking: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/CRMetrics/old/CRMetrics.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘CRMetrics/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘ggpmisc’ + +Package suggested but not available for checking: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# csmpv + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/csmpv +* Date/Publication: 2024-03-01 18:12:44 UTC +* Number of recursive dependencies: 175 + +Run `revdepcheck::cloud_details(, "csmpv")` for more info + +
+ +## In both + +* checking whether package ‘csmpv’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/csmpv/new/csmpv.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘csmpv’ ... +** package ‘csmpv’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘csmpv’ +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘csmpv’ +* removing ‘/tmp/workdir/csmpv/new/csmpv.Rcheck/csmpv’ + + +``` +### CRAN + +``` +* installing *source* package ‘csmpv’ ... +** package ‘csmpv’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘csmpv’ +* removing ‘/tmp/workdir/csmpv/old/csmpv.Rcheck/csmpv’ + + +``` +# ctsem + +
+ +* Version: 3.10.0 +* GitHub: https://github.com/cdriveraus/ctsem +* Source code: https://github.com/cran/ctsem +* Date/Publication: 2024-05-09 14:40:03 UTC +* Number of recursive dependencies: 159 + +Run `revdepcheck::cloud_details(, "ctsem")` for more info + +
+ +## In both + +* checking whether package ‘ctsem’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ctsem’ ... +** package ‘ctsem’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 +ERROR: compilation failed for package ‘ctsem’ +* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’ + + +``` +### CRAN + +``` +* installing *source* package ‘ctsem’ ... +** package ‘ctsem’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1 +ERROR: compilation failed for package ‘ctsem’ +* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’ + + +``` +# CytoSimplex + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/welch-lab/CytoSimplex +* Source code: https://github.com/cran/CytoSimplex +* Date/Publication: 2023-12-15 09:30:06 UTC +* Number of recursive dependencies: 177 + +Run `revdepcheck::cloud_details(, "CytoSimplex")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/CytoSimplex/new/CytoSimplex.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘CytoSimplex/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘CytoSimplex.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 2 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/CytoSimplex/old/CytoSimplex.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘CytoSimplex/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘CytoSimplex.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 2 NOTEs + + + + + +``` +# DepthProc + +
+ +* Version: 2.1.5 +* GitHub: https://github.com/zzawadz/DepthProc +* Source code: https://github.com/cran/DepthProc +* Date/Publication: 2022-02-03 20:30:02 UTC +* Number of recursive dependencies: 134 + +Run `revdepcheck::cloud_details(, "DepthProc")` for more info + +
+ +## In both + +* checking whether package ‘DepthProc’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/DepthProc/new/DepthProc.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘DepthProc’ ... +** package ‘DepthProc’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Depth.cpp -o Depth.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationEstimators.cpp -o LocationEstimators.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepth.cpp -o LocationScaleDepth.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o +... +installing to /tmp/workdir/DepthProc/new/DepthProc.Rcheck/00LOCK-DepthProc/00new/DepthProc/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘DepthProc’ +* removing ‘/tmp/workdir/DepthProc/new/DepthProc.Rcheck/DepthProc’ + + +``` +### CRAN + +``` +* installing *source* package ‘DepthProc’ ... +** package ‘DepthProc’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Depth.cpp -o Depth.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationEstimators.cpp -o LocationEstimators.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepth.cpp -o LocationScaleDepth.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o +... +installing to /tmp/workdir/DepthProc/old/DepthProc.Rcheck/00LOCK-DepthProc/00new/DepthProc/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘DepthProc’ +* removing ‘/tmp/workdir/DepthProc/old/DepthProc.Rcheck/DepthProc’ + + +``` +# DIscBIO + +
+ +* Version: 1.2.2 +* GitHub: https://github.com/ocbe-uio/DIscBIO +* Source code: https://github.com/cran/DIscBIO +* Date/Publication: 2023-11-06 10:50:02 UTC +* Number of recursive dependencies: 209 + +Run `revdepcheck::cloud_details(, "DIscBIO")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/DIscBIO/new/DIscBIO.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘DIscBIO/DESCRIPTION’ ... OK +... +* checking Rd \usage sections ... OK +* checking Rd contents ... OK +* checking for unstated dependencies in examples ... OK +* checking contents of ‘data’ directory ... OK +* checking data for non-ASCII characters ... OK +* checking LazyData ... OK +* checking data for ASCII and uncompressed saves ... OK +* checking examples ... OK +* DONE +Status: 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/DIscBIO/old/DIscBIO.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘DIscBIO/DESCRIPTION’ ... OK +... +* checking Rd \usage sections ... OK +* checking Rd contents ... OK +* checking for unstated dependencies in examples ... OK +* checking contents of ‘data’ directory ... OK +* checking data for non-ASCII characters ... OK +* checking LazyData ... OK +* checking data for ASCII and uncompressed saves ... OK +* checking examples ... OK +* DONE +Status: 1 NOTE + + + + + +``` +# DR.SC + +
+ +* Version: 3.4 +* GitHub: https://github.com/feiyoung/DR.SC +* Source code: https://github.com/cran/DR.SC +* Date/Publication: 2024-03-19 08:40:02 UTC +* Number of recursive dependencies: 150 + +Run `revdepcheck::cloud_details(, "DR.SC")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘DR.SC/DESCRIPTION’ ... OK +... +* this is package ‘DR.SC’ version ‘3.4’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/DR.SC/old/DR.SC.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘DR.SC/DESCRIPTION’ ... OK +... +* this is package ‘DR.SC’ version ‘3.4’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# dyngen + +
+ +* Version: 1.0.5 +* GitHub: https://github.com/dynverse/dyngen +* Source code: https://github.com/cran/dyngen +* Date/Publication: 2022-10-12 15:22:39 UTC +* Number of recursive dependencies: 209 + +Run `revdepcheck::cloud_details(, "dyngen")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/dyngen/new/dyngen.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘dyngen/DESCRIPTION’ ... OK +... +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘getting_started.html.asis’ using ‘UTF-8’... OK + ‘installation.html.asis’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/dyngen/old/dyngen.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘dyngen/DESCRIPTION’ ... OK +... +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘getting_started.html.asis’ using ‘UTF-8’... OK + ‘installation.html.asis’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + +``` +# EcoEnsemble + +
+ +* Version: 1.0.5 +* GitHub: NA +* Source code: https://github.com/cran/EcoEnsemble +* Date/Publication: 2023-09-18 11:50:02 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info + +
+ +## In both + +* checking whether package ‘EcoEnsemble’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘EcoEnsemble’ ... +** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +stanExports_ensemble_model_hierarchical.cc:32:1: fatal error: error writing to /tmp/ccqp74mc.s: Cannot allocate memory + 32 | } + | ^ +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical.o] Error 1 +ERROR: compilation failed for package ‘EcoEnsemble’ +* removing ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/EcoEnsemble’ + + +``` +### CRAN + +``` +* installing *source* package ‘EcoEnsemble’ ... +** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical.o] Error 1 +ERROR: compilation failed for package ‘EcoEnsemble’ +* removing ‘/tmp/workdir/EcoEnsemble/old/EcoEnsemble.Rcheck/EcoEnsemble’ + + +``` +# ecolottery + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/frmunoz/ecolottery +* Source code: https://github.com/cran/ecolottery +* Date/Publication: 2017-07-03 11:01:29 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "ecolottery")` for more info + +
+ +## In both + +* checking whether package ‘ecolottery’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ecolottery’ ... +** package ‘ecolottery’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ecolottery’ +* removing ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/ecolottery’ + + +``` +### CRAN + +``` +* installing *source* package ‘ecolottery’ ... +** package ‘ecolottery’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ecolottery’ +* removing ‘/tmp/workdir/ecolottery/old/ecolottery.Rcheck/ecolottery’ + + +``` +# EpiEstim + +
+ +* Version: 2.2-4 +* GitHub: https://github.com/mrc-ide/EpiEstim +* Source code: https://github.com/cran/EpiEstim +* Date/Publication: 2021-01-07 16:20:10 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "EpiEstim")` for more info + +
+ +## In both + +* checking whether package ‘EpiEstim’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘EpiEstim’ ... +** package ‘EpiEstim’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘EpiEstim’ +* removing ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/EpiEstim’ + + +``` +### CRAN + +``` +* installing *source* package ‘EpiEstim’ ... +** package ‘EpiEstim’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘EpiEstim’ +* removing ‘/tmp/workdir/EpiEstim/old/EpiEstim.Rcheck/EpiEstim’ + + +``` +# evolqg + +
+ +* Version: 0.3-4 +* GitHub: https://github.com/lem-usp/evolqg +* Source code: https://github.com/cran/evolqg +* Date/Publication: 2023-12-05 15:20:12 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "evolqg")` for more info + +
+ +## In both + +* checking whether package ‘evolqg’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/evolqg/new/evolqg.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘evolqg’ ... +** package ‘evolqg’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c fast_RS.cpp -o fast_RS.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o evolqg.so RcppExports.o fast_RS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/evolqg/new/evolqg.Rcheck/00LOCK-evolqg/00new/evolqg/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘evolqg’ +* removing ‘/tmp/workdir/evolqg/new/evolqg.Rcheck/evolqg’ + + +``` +### CRAN + +``` +* installing *source* package ‘evolqg’ ... +** package ‘evolqg’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c fast_RS.cpp -o fast_RS.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o evolqg.so RcppExports.o fast_RS.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/evolqg/old/evolqg.Rcheck/00LOCK-evolqg/00new/evolqg/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘evolqg’ +* removing ‘/tmp/workdir/evolqg/old/evolqg.Rcheck/evolqg’ + + +``` +# ForecastComb + +
+ +* Version: 1.3.1 +* GitHub: https://github.com/ceweiss/ForecastComb +* Source code: https://github.com/cran/ForecastComb +* Date/Publication: 2018-08-07 13:50:08 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "ForecastComb")` for more info + +
+ +## In both + +* checking whether package ‘ForecastComb’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ForecastComb/new/ForecastComb.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ForecastComb’ ... +** package ‘ForecastComb’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ForecastComb’ +* removing ‘/tmp/workdir/ForecastComb/new/ForecastComb.Rcheck/ForecastComb’ + + +``` +### CRAN + +``` +* installing *source* package ‘ForecastComb’ ... +** package ‘ForecastComb’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ForecastComb’ +* removing ‘/tmp/workdir/ForecastComb/old/ForecastComb.Rcheck/ForecastComb’ + + +``` +# gapfill + +
+ +* Version: 0.9.6-1 +* GitHub: https://github.com/florafauna/gapfill +* Source code: https://github.com/cran/gapfill +* Date/Publication: 2021-02-12 10:10:05 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "gapfill")` for more info + +
+ +## In both + +* checking whether package ‘gapfill’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/gapfill/new/gapfill.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Packages which this enhances but not available for checking: + 'raster', 'doParallel', 'doMPI' + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘gapfill’ ... +** package ‘gapfill’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gapfill.cpp -o gapfill.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gapfill.so RcppExports.o gapfill.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/gapfill/new/gapfill.Rcheck/00LOCK-gapfill/00new/gapfill/libs +** R +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘gapfill’ +* removing ‘/tmp/workdir/gapfill/new/gapfill.Rcheck/gapfill’ + + +``` +### CRAN + +``` +* installing *source* package ‘gapfill’ ... +** package ‘gapfill’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c gapfill.cpp -o gapfill.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gapfill.so RcppExports.o gapfill.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/gapfill/old/gapfill.Rcheck/00LOCK-gapfill/00new/gapfill/libs +** R +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘gapfill’ +* removing ‘/tmp/workdir/gapfill/old/gapfill.Rcheck/gapfill’ + + +``` +# GeomComb + +
+ +* Version: 1.0 +* GitHub: https://github.com/ceweiss/GeomComb +* Source code: https://github.com/cran/GeomComb +* Date/Publication: 2016-11-27 16:02:26 +* Number of recursive dependencies: 74 + +Run `revdepcheck::cloud_details(, "GeomComb")` for more info + +
+ +## In both + +* checking whether package ‘GeomComb’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/GeomComb/new/GeomComb.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘GeomComb’ ... +** package ‘GeomComb’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘GeomComb’ +* removing ‘/tmp/workdir/GeomComb/new/GeomComb.Rcheck/GeomComb’ + + +``` +### CRAN + +``` +* installing *source* package ‘GeomComb’ ... +** package ‘GeomComb’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘GeomComb’ +* removing ‘/tmp/workdir/GeomComb/old/GeomComb.Rcheck/GeomComb’ + + +``` +# geostan + +
+ +* Version: 0.6.1 +* GitHub: https://github.com/ConnorDonegan/geostan +* Source code: https://github.com/cran/geostan +* Date/Publication: 2024-05-10 22:23:01 UTC +* Number of recursive dependencies: 108 + +Run `revdepcheck::cloud_details(, "geostan")` for more info + +
+ +## Newly broken + +* checking whether package ‘geostan’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/geostan/new/geostan.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking installed package size ... NOTE + ``` + installed size is 129.8Mb + sub-directories of 1Mb or more: + libs 127.6Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘RcppParallel’ ‘rstantools’ + All declared Imports should be used. + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘geostan’ ... +** package ‘geostan’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +stanExports_foundation.cc:32:1: fatal error: error writing to /tmp/cccy6wQ6.s: Cannot allocate memory + 32 | } + | ^ +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_foundation.o] Error 1 +ERROR: compilation failed for package ‘geostan’ +* removing ‘/tmp/workdir/geostan/new/geostan.Rcheck/geostan’ + + +``` +### CRAN + +``` +* installing *source* package ‘geostan’ ... +** package ‘geostan’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** checking absolute paths in shared objects and dynamic libraries +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (geostan) + + +``` +# ggrcs + +
+ +* Version: 0.3.8 +* GitHub: NA +* Source code: https://github.com/cran/ggrcs +* Date/Publication: 2024-01-30 03:20:08 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "ggrcs")` for more info + +
+ +## In both + +* checking whether package ‘ggrcs’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ggrcs/new/ggrcs.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ggrcs’ ... +** package ‘ggrcs’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ggrcs’ +* removing ‘/tmp/workdir/ggrcs/new/ggrcs.Rcheck/ggrcs’ + + +``` +### CRAN + +``` +* installing *source* package ‘ggrcs’ ... +** package ‘ggrcs’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ggrcs’ +* removing ‘/tmp/workdir/ggrcs/old/ggrcs.Rcheck/ggrcs’ + + +``` +# ggrisk + +
+ +* Version: 1.3 +* GitHub: https://github.com/yikeshu0611/ggrisk +* Source code: https://github.com/cran/ggrisk +* Date/Publication: 2021-08-09 07:40:06 UTC +* Number of recursive dependencies: 115 + +Run `revdepcheck::cloud_details(, "ggrisk")` for more info + +
+ +## In both + +* checking whether package ‘ggrisk’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ggrisk/new/ggrisk.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ggrisk’ ... +** package ‘ggrisk’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ggrisk’ +* removing ‘/tmp/workdir/ggrisk/new/ggrisk.Rcheck/ggrisk’ + + +``` +### CRAN + +``` +* installing *source* package ‘ggrisk’ ... +** package ‘ggrisk’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘ggrisk’ +* removing ‘/tmp/workdir/ggrisk/old/ggrisk.Rcheck/ggrisk’ + + +``` +# ggsector + +
+ +* Version: 1.6.6 +* GitHub: https://github.com/yanpd01/ggsector +* Source code: https://github.com/cran/ggsector +* Date/Publication: 2022-12-05 15:20:02 UTC +* Number of recursive dependencies: 159 + +Run `revdepcheck::cloud_details(, "ggsector")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/ggsector/new/ggsector.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ggsector/DESCRIPTION’ ... OK +... +* this is package ‘ggsector’ version ‘1.6.6’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/ggsector/old/ggsector.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ggsector/DESCRIPTION’ ... OK +... +* this is package ‘ggsector’ version ‘1.6.6’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# gJLS2 + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/gJLS2 +* Date/Publication: 2021-09-30 09:00:05 UTC +* Number of recursive dependencies: 45 + +Run `revdepcheck::cloud_details(, "gJLS2")` for more info + +
+ +## In both + +* checking whether package ‘gJLS2’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/gJLS2/new/gJLS2.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘gJLS2’ ... +** package ‘gJLS2’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘gJLS2’ +* removing ‘/tmp/workdir/gJLS2/new/gJLS2.Rcheck/gJLS2’ + + +``` +### CRAN + +``` +* installing *source* package ‘gJLS2’ ... +** package ‘gJLS2’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘gJLS2’ +* removing ‘/tmp/workdir/gJLS2/old/gJLS2.Rcheck/gJLS2’ + + +``` +# grandR + +
+ +* Version: 0.2.5 +* GitHub: https://github.com/erhard-lab/grandR +* Source code: https://github.com/cran/grandR +* Date/Publication: 2024-02-15 15:30:02 UTC +* Number of recursive dependencies: 265 + +Run `revdepcheck::cloud_details(, "grandR")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/grandR/new/grandR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘grandR/DESCRIPTION’ ... OK +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘getting-started.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/grandR/old/grandR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘grandR/DESCRIPTION’ ... OK +... +* checking installed files from ‘inst/doc’ ... OK +* checking files in ‘vignettes’ ... OK +* checking examples ... OK +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘getting-started.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + +``` +# Greg + +
+ +* Version: 2.0.2 +* GitHub: https://github.com/gforge/Greg +* Source code: https://github.com/cran/Greg +* Date/Publication: 2024-01-29 13:30:21 UTC +* Number of recursive dependencies: 152 + +Run `revdepcheck::cloud_details(, "Greg")` for more info + +
+ +## In both + +* checking whether package ‘Greg’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/Greg/new/Greg.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘Greg’ ... +** package ‘Greg’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘Greg’ +* removing ‘/tmp/workdir/Greg/new/Greg.Rcheck/Greg’ + + +``` +### CRAN + +``` +* installing *source* package ‘Greg’ ... +** package ‘Greg’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘Greg’ +* removing ‘/tmp/workdir/Greg/old/Greg.Rcheck/Greg’ + + +``` +# greport + +
+ +* Version: 0.7-4 +* GitHub: https://github.com/harrelfe/greport +* Source code: https://github.com/cran/greport +* Date/Publication: 2023-09-02 22:20:02 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "greport")` for more info + +
+ +## In both + +* checking whether package ‘greport’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/greport/new/greport.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘greport’ ... +** package ‘greport’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘greport’ +* removing ‘/tmp/workdir/greport/new/greport.Rcheck/greport’ + + +``` +### CRAN + +``` +* installing *source* package ‘greport’ ... +** package ‘greport’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘greport’ +* removing ‘/tmp/workdir/greport/old/greport.Rcheck/greport’ + + +``` +# harmony + +
+ +* Version: 1.2.0 +* GitHub: NA +* Source code: https://github.com/cran/harmony +* Date/Publication: 2023-11-29 08:30:04 UTC +* Number of recursive dependencies: 214 + +Run `revdepcheck::cloud_details(, "harmony")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/harmony/new/harmony.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘harmony/DESCRIPTION’ ... OK +... +--- finished re-building ‘quickstart.Rmd’ + +SUMMARY: processing the following file failed: + ‘Seurat.Rmd’ + +Error: Vignette re-building failed. +Execution halted + +* DONE +Status: 1 WARNING, 3 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/harmony/old/harmony.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘harmony/DESCRIPTION’ ... OK +... +--- finished re-building ‘quickstart.Rmd’ + +SUMMARY: processing the following file failed: + ‘Seurat.Rmd’ + +Error: Vignette re-building failed. +Execution halted + +* DONE +Status: 1 WARNING, 3 NOTEs + + + + + +``` +# hettx + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/bfifield/hettx +* Source code: https://github.com/cran/hettx +* Date/Publication: 2023-08-19 22:22:34 UTC +* Number of recursive dependencies: 85 + +Run `revdepcheck::cloud_details(, "hettx")` for more info + +
+ +## In both + +* checking whether package ‘hettx’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/hettx/new/hettx.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘hettx’ ... +** package ‘hettx’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘hettx’ +* removing ‘/tmp/workdir/hettx/new/hettx.Rcheck/hettx’ + + +``` +### CRAN + +``` +* installing *source* package ‘hettx’ ... +** package ‘hettx’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘hettx’ +* removing ‘/tmp/workdir/hettx/old/hettx.Rcheck/hettx’ + + +``` +# hIRT + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/xiangzhou09/hIRT +* Source code: https://github.com/cran/hIRT +* Date/Publication: 2020-03-26 17:10:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "hIRT")` for more info + +
+ +## In both + +* checking whether package ‘hIRT’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/hIRT/new/hIRT.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘hIRT’ ... +** package ‘hIRT’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘hIRT’ +* removing ‘/tmp/workdir/hIRT/new/hIRT.Rcheck/hIRT’ + + +``` +### CRAN + +``` +* installing *source* package ‘hIRT’ ... +** package ‘hIRT’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘hIRT’ +* removing ‘/tmp/workdir/hIRT/old/hIRT.Rcheck/hIRT’ + + +``` +# Hmsc + +
+ +* Version: 3.0-13 +* GitHub: https://github.com/hmsc-r/HMSC +* Source code: https://github.com/cran/Hmsc +* Date/Publication: 2022-08-11 14:10:14 UTC +* Number of recursive dependencies: 76 + +Run `revdepcheck::cloud_details(, "Hmsc")` for more info + +
+ +## In both + +* checking whether package ‘Hmsc’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/Hmsc/new/Hmsc.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘Hmsc’ ... +** package ‘Hmsc’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘Hmsc’ +* removing ‘/tmp/workdir/Hmsc/new/Hmsc.Rcheck/Hmsc’ + + +``` +### CRAN + +``` +* installing *source* package ‘Hmsc’ ... +** package ‘Hmsc’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘Hmsc’ +* removing ‘/tmp/workdir/Hmsc/old/Hmsc.Rcheck/Hmsc’ + + +``` +# iNZightPlots + +
+ +* Version: 2.15.3 +* GitHub: https://github.com/iNZightVIT/iNZightPlots +* Source code: https://github.com/cran/iNZightPlots +* Date/Publication: 2023-10-14 05:00:02 UTC +* Number of recursive dependencies: 162 + +Run `revdepcheck::cloud_details(, "iNZightPlots")` for more info + +
+ +## In both + +* checking whether package ‘iNZightPlots’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘iNZightPlots’ ... +** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘iNZightPlots’ +* removing ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/iNZightPlots’ + + +``` +### CRAN + +``` +* installing *source* package ‘iNZightPlots’ ... +** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘iNZightPlots’ +* removing ‘/tmp/workdir/iNZightPlots/old/iNZightPlots.Rcheck/iNZightPlots’ + + +``` +# iNZightRegression + +
+ +* Version: 1.3.4 +* GitHub: https://github.com/iNZightVIT/iNZightRegression +* Source code: https://github.com/cran/iNZightRegression +* Date/Publication: 2024-04-05 02:32:59 UTC +* Number of recursive dependencies: 154 + +Run `revdepcheck::cloud_details(, "iNZightRegression")` for more info + +
+ +## In both + +* checking whether package ‘iNZightRegression’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘iNZightRegression’ ... +** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘iNZightRegression’ +* removing ‘/tmp/workdir/iNZightRegression/new/iNZightRegression.Rcheck/iNZightRegression’ + + +``` +### CRAN + +``` +* installing *source* package ‘iNZightRegression’ ... +** package ‘iNZightRegression’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘iNZightRegression’ +* removing ‘/tmp/workdir/iNZightRegression/old/iNZightRegression.Rcheck/iNZightRegression’ + + +``` +# IRexamples + +
+ +* Version: 0.0.4 +* GitHub: https://github.com/vinhdizzo/IRexamples +* Source code: https://github.com/cran/IRexamples +* Date/Publication: 2023-10-06 06:40:02 UTC +* Number of recursive dependencies: 185 + +Run `revdepcheck::cloud_details(, "IRexamples")` for more info + +
+ +## In both + +* checking whether package ‘IRexamples’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/IRexamples/new/IRexamples.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘IRexamples’ ... +** package ‘IRexamples’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘IRexamples’ +* removing ‘/tmp/workdir/IRexamples/new/IRexamples.Rcheck/IRexamples’ + + +``` +### CRAN + +``` +* installing *source* package ‘IRexamples’ ... +** package ‘IRexamples’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘IRexamples’ +* removing ‘/tmp/workdir/IRexamples/old/IRexamples.Rcheck/IRexamples’ + + +``` +# joineRML + +
+ +* Version: 0.4.6 +* GitHub: https://github.com/graemeleehickey/joineRML +* Source code: https://github.com/cran/joineRML +* Date/Publication: 2023-01-20 04:50:02 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "joineRML")` for more info + +
+ +## In both + +* checking whether package ‘joineRML’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘joineRML’ ... +** package ‘joineRML’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘joineRML’ +* removing ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/joineRML’ + + +``` +### CRAN + +``` +* installing *source* package ‘joineRML’ ... +** package ‘joineRML’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘joineRML’ +* removing ‘/tmp/workdir/joineRML/old/joineRML.Rcheck/joineRML’ + + +``` +# JWileymisc + +
+ +* Version: 1.4.1 +* GitHub: https://github.com/JWiley/JWileymisc +* Source code: https://github.com/cran/JWileymisc +* Date/Publication: 2023-10-05 04:50:02 UTC +* Number of recursive dependencies: 164 + +Run `revdepcheck::cloud_details(, "JWileymisc")` for more info + +
+ +## In both + +* checking whether package ‘JWileymisc’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/JWileymisc/new/JWileymisc.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘JWileymisc’ ... +** package ‘JWileymisc’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘JWileymisc’ +* removing ‘/tmp/workdir/JWileymisc/new/JWileymisc.Rcheck/JWileymisc’ + + +``` +### CRAN + +``` +* installing *source* package ‘JWileymisc’ ... +** package ‘JWileymisc’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘JWileymisc’ +* removing ‘/tmp/workdir/JWileymisc/old/JWileymisc.Rcheck/JWileymisc’ + + +``` +# kmc + +
+ +* Version: 0.4-2 +* GitHub: https://github.com/yfyang86/kmc +* Source code: https://github.com/cran/kmc +* Date/Publication: 2022-11-22 08:30:02 UTC +* Number of recursive dependencies: 61 + +Run `revdepcheck::cloud_details(, "kmc")` for more info + +
+ +## In both + +* checking whether package ‘kmc’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/kmc/new/kmc.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘kmc’ ... +** package ‘kmc’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExport.cpp -o RcppExport.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc.cpp -o kmc.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc_init.c -o kmc_init.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c surv2.c -o surv2.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o kmc.so RcppExport.o kmc.o kmc_init.o surv2.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/kmc/new/kmc.Rcheck/00LOCK-kmc/00new/kmc/libs +** R +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘emplik’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘kmc’ +* removing ‘/tmp/workdir/kmc/new/kmc.Rcheck/kmc’ + + +``` +### CRAN + +``` +* installing *source* package ‘kmc’ ... +** package ‘kmc’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExport.cpp -o RcppExport.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc.cpp -o kmc.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c kmc_init.c -o kmc_init.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c surv2.c -o surv2.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o kmc.so RcppExport.o kmc.o kmc_init.o surv2.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/kmc/old/kmc.Rcheck/00LOCK-kmc/00new/kmc/libs +** R +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘emplik’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘kmc’ +* removing ‘/tmp/workdir/kmc/old/kmc.Rcheck/kmc’ + + +``` +# L2E + +
+ +* Version: 2.0 +* GitHub: NA +* Source code: https://github.com/cran/L2E +* Date/Publication: 2022-09-08 21:13:00 UTC +* Number of recursive dependencies: 65 + +Run `revdepcheck::cloud_details(, "L2E")` for more info + +
+ +## In both + +* checking whether package ‘L2E’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/L2E/new/L2E.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘L2E’ ... +** package ‘L2E’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required +Execution halted +ERROR: lazy loading failed for package ‘L2E’ +* removing ‘/tmp/workdir/L2E/new/L2E.Rcheck/L2E’ + + +``` +### CRAN + +``` +* installing *source* package ‘L2E’ ... +** package ‘L2E’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required +Execution halted +ERROR: lazy loading failed for package ‘L2E’ +* removing ‘/tmp/workdir/L2E/old/L2E.Rcheck/L2E’ + + +``` +# llbayesireg + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/llbayesireg +* Date/Publication: 2019-04-04 16:20:03 UTC +* Number of recursive dependencies: 61 + +Run `revdepcheck::cloud_details(, "llbayesireg")` for more info + +
+ +## In both + +* checking whether package ‘llbayesireg’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/llbayesireg/new/llbayesireg.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘llbayesireg’ ... +** package ‘llbayesireg’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘llbayesireg’ +* removing ‘/tmp/workdir/llbayesireg/new/llbayesireg.Rcheck/llbayesireg’ + + +``` +### CRAN + +``` +* installing *source* package ‘llbayesireg’ ... +** package ‘llbayesireg’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘llbayesireg’ +* removing ‘/tmp/workdir/llbayesireg/old/llbayesireg.Rcheck/llbayesireg’ + + +``` +# LorenzRegression + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/LorenzRegression +* Date/Publication: 2023-02-28 17:32:34 UTC +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "LorenzRegression")` for more info + +
+ +## In both + +* checking whether package ‘LorenzRegression’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/LorenzRegression/new/LorenzRegression.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘LorenzRegression’ ... +** package ‘LorenzRegression’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_fitness.cpp -o GA_fitness.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_meanrank.cpp -o GA_meanrank.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_derivative.cpp -o PLR_derivative.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_loss.cpp -o PLR_loss.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘LorenzRegression’ +* removing ‘/tmp/workdir/LorenzRegression/new/LorenzRegression.Rcheck/LorenzRegression’ + + +``` +### CRAN + +``` +* installing *source* package ‘LorenzRegression’ ... +** package ‘LorenzRegression’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_fitness.cpp -o GA_fitness.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_meanrank.cpp -o GA_meanrank.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_derivative.cpp -o PLR_derivative.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_loss.cpp -o PLR_loss.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘LorenzRegression’ +* removing ‘/tmp/workdir/LorenzRegression/old/LorenzRegression.Rcheck/LorenzRegression’ + + +``` +# lsirm12pl + +
+ +* Version: 1.3.1 +* GitHub: NA +* Source code: https://github.com/cran/lsirm12pl +* Date/Publication: 2023-06-22 14:12:35 UTC +* Number of recursive dependencies: 123 + +Run `revdepcheck::cloud_details(, "lsirm12pl")` for more info + +
+ +## In both + +* checking whether package ‘lsirm12pl’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘lsirm12pl’ ... +** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c log_likelihood.cpp -o log_likelihood.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma.cpp -o lsirm1pl_fixed_gamma.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma_mar.cpp -o lsirm1pl_fixed_gamma_mar.o +... +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘lsirm12pl’ +* removing ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/lsirm12pl’ + + +``` +### CRAN + +``` +* installing *source* package ‘lsirm12pl’ ... +** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c log_likelihood.cpp -o log_likelihood.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma.cpp -o lsirm1pl_fixed_gamma.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl_fixed_gamma_mar.cpp -o lsirm1pl_fixed_gamma_mar.o +... +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘lsirm12pl’ +* removing ‘/tmp/workdir/lsirm12pl/old/lsirm12pl.Rcheck/lsirm12pl’ + + +``` +# mbsts + +
+ +* Version: 3.0 +* GitHub: NA +* Source code: https://github.com/cran/mbsts +* Date/Publication: 2023-01-07 01:10:02 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "mbsts")` for more info + +
+ +## In both + +* checking whether package ‘mbsts’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘mbsts’ ... +** package ‘mbsts’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘mbsts’ +* removing ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/mbsts’ + + +``` +### CRAN + +``` +* installing *source* package ‘mbsts’ ... +** package ‘mbsts’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘mbsts’ +* removing ‘/tmp/workdir/mbsts/old/mbsts.Rcheck/mbsts’ + + +``` +# MendelianRandomization + +
+ +* Version: 0.10.0 +* GitHub: NA +* Source code: https://github.com/cran/MendelianRandomization +* Date/Publication: 2024-04-12 10:10:02 UTC +* Number of recursive dependencies: 88 + +Run `revdepcheck::cloud_details(, "MendelianRandomization")` for more info + +
+ +## In both + +* checking whether package ‘MendelianRandomization’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘MendelianRandomization’ ... +** package ‘MendelianRandomization’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c mvmrcML.cpp -o mvmrcML.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o MendelianRandomization.so RcppExports.o mvmrcML.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/00LOCK-MendelianRandomization/00new/MendelianRandomization/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘MendelianRandomization’ +* removing ‘/tmp/workdir/MendelianRandomization/new/MendelianRandomization.Rcheck/MendelianRandomization’ + + +``` +### CRAN + +``` +* installing *source* package ‘MendelianRandomization’ ... +** package ‘MendelianRandomization’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c mvmrcML.cpp -o mvmrcML.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o MendelianRandomization.so RcppExports.o mvmrcML.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/MendelianRandomization/old/MendelianRandomization.Rcheck/00LOCK-MendelianRandomization/00new/MendelianRandomization/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘MendelianRandomization’ +* removing ‘/tmp/workdir/MendelianRandomization/old/MendelianRandomization.Rcheck/MendelianRandomization’ + + +``` +# MetabolicSurv + +
+ +* Version: 1.1.2 +* GitHub: https://github.com/OlajumokeEvangelina/MetabolicSurv +* Source code: https://github.com/cran/MetabolicSurv +* Date/Publication: 2021-06-11 08:30:02 UTC +* Number of recursive dependencies: 142 + +Run `revdepcheck::cloud_details(, "MetabolicSurv")` for more info + +
+ +## In both + +* checking whether package ‘MetabolicSurv’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/MetabolicSurv/new/MetabolicSurv.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘MetabolicSurv’ ... +** package ‘MetabolicSurv’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘MetabolicSurv’ +* removing ‘/tmp/workdir/MetabolicSurv/new/MetabolicSurv.Rcheck/MetabolicSurv’ + + +``` +### CRAN + +``` +* installing *source* package ‘MetabolicSurv’ ... +** package ‘MetabolicSurv’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘MetabolicSurv’ +* removing ‘/tmp/workdir/MetabolicSurv/old/MetabolicSurv.Rcheck/MetabolicSurv’ + + +``` +# miWQS + +
+ +* Version: 0.4.4 +* GitHub: https://github.com/phargarten2/miWQS +* Source code: https://github.com/cran/miWQS +* Date/Publication: 2021-04-02 21:50:02 UTC +* Number of recursive dependencies: 152 + +Run `revdepcheck::cloud_details(, "miWQS")` for more info + +
+ +## In both + +* checking whether package ‘miWQS’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘miWQS’ ... +** package ‘miWQS’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘miWQS’ +* removing ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/miWQS’ + + +``` +### CRAN + +``` +* installing *source* package ‘miWQS’ ... +** package ‘miWQS’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘miWQS’ +* removing ‘/tmp/workdir/miWQS/old/miWQS.Rcheck/miWQS’ + + +``` +# mlmts + +
+ +* Version: 1.1.1 +* GitHub: NA +* Source code: https://github.com/cran/mlmts +* Date/Publication: 2023-01-22 21:30:02 UTC +* Number of recursive dependencies: 241 + +Run `revdepcheck::cloud_details(, "mlmts")` for more info + +
+ +## In both + +* checking whether package ‘mlmts’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/mlmts/new/mlmts.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘mlmts’ ... +** package ‘mlmts’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : package or namespace load failed for ‘quantspec’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error: unable to load R code in package ‘mlmts’ +Execution halted +ERROR: lazy loading failed for package ‘mlmts’ +* removing ‘/tmp/workdir/mlmts/new/mlmts.Rcheck/mlmts’ + + +``` +### CRAN + +``` +* installing *source* package ‘mlmts’ ... +** package ‘mlmts’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error : package or namespace load failed for ‘quantspec’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Error: unable to load R code in package ‘mlmts’ +Execution halted +ERROR: lazy loading failed for package ‘mlmts’ +* removing ‘/tmp/workdir/mlmts/old/mlmts.Rcheck/mlmts’ + + +``` +# MRZero + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/MRZero +* Date/Publication: 2024-04-14 09:30:03 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "MRZero")` for more info + +
+ +## In both + +* checking whether package ‘MRZero’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/MRZero/new/MRZero.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘MRZero’ ... +** package ‘MRZero’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘MRZero’ +* removing ‘/tmp/workdir/MRZero/new/MRZero.Rcheck/MRZero’ + + +``` +### CRAN + +``` +* installing *source* package ‘MRZero’ ... +** package ‘MRZero’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘MRZero’ +* removing ‘/tmp/workdir/MRZero/old/MRZero.Rcheck/MRZero’ + + +``` +# Multiaovbay + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/Multiaovbay +* Date/Publication: 2023-03-17 17:20:02 UTC +* Number of recursive dependencies: 161 + +Run `revdepcheck::cloud_details(, "Multiaovbay")` for more info + +
+ +## In both + +* checking whether package ‘Multiaovbay’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/Multiaovbay/new/Multiaovbay.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘Multiaovbay’ ... +** package ‘Multiaovbay’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘Multiaovbay’ +* removing ‘/tmp/workdir/Multiaovbay/new/Multiaovbay.Rcheck/Multiaovbay’ + + +``` +### CRAN + +``` +* installing *source* package ‘Multiaovbay’ ... +** package ‘Multiaovbay’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘Multiaovbay’ +* removing ‘/tmp/workdir/Multiaovbay/old/Multiaovbay.Rcheck/Multiaovbay’ + + +``` +# multilevelTools + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/JWiley/multilevelTools +* Source code: https://github.com/cran/multilevelTools +* Date/Publication: 2020-03-04 09:50:02 UTC +* Number of recursive dependencies: 164 + +Run `revdepcheck::cloud_details(, "multilevelTools")` for more info + +
+ +## In both + +* checking whether package ‘multilevelTools’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘multilevelTools’ ... +** package ‘multilevelTools’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘multilevelTools’ +* removing ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/multilevelTools’ + + +``` +### CRAN + +``` +* installing *source* package ‘multilevelTools’ ... +** package ‘multilevelTools’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘multilevelTools’ +* removing ‘/tmp/workdir/multilevelTools/old/multilevelTools.Rcheck/multilevelTools’ + + +``` +# multinma + +
+ +* Version: 0.7.0 +* GitHub: https://github.com/dmphillippo/multinma +* Source code: https://github.com/cran/multinma +* Date/Publication: 2024-05-07 15:40:02 UTC +* Number of recursive dependencies: 152 + +Run `revdepcheck::cloud_details(, "multinma")` for more info + +
+ +## In both + +* checking whether package ‘multinma’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/multinma/new/multinma.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘multinma’ ... +** package ‘multinma’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_mspline_namespace::model_survival_mspline; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_mspline.o] Error 1 +ERROR: compilation failed for package ‘multinma’ +* removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’ + + +``` +### CRAN + +``` +* installing *source* package ‘multinma’ ... +** package ‘multinma’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_mspline_namespace::model_survival_mspline; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_mspline.o] Error 1 +ERROR: compilation failed for package ‘multinma’ +* removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’ + + +``` +# NCA + +
+ +* Version: 4.0.1 +* GitHub: NA +* Source code: https://github.com/cran/NCA +* Date/Publication: 2024-02-23 09:30:15 UTC +* Number of recursive dependencies: 99 + +Run `revdepcheck::cloud_details(, "NCA")` for more info + +
+ +## In both + +* checking whether package ‘NCA’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/NCA/new/NCA.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘NCA’ ... +** package ‘NCA’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘NCA’ +* removing ‘/tmp/workdir/NCA/new/NCA.Rcheck/NCA’ + + +``` +### CRAN + +``` +* installing *source* package ‘NCA’ ... +** package ‘NCA’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘NCA’ +* removing ‘/tmp/workdir/NCA/old/NCA.Rcheck/NCA’ + + +``` +# netcmc + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/netcmc +* Date/Publication: 2022-11-08 22:30:15 UTC +* Number of recursive dependencies: 61 + +Run `revdepcheck::cloud_details(, "netcmc")` for more info + +
+ +## In both + +* checking whether package ‘netcmc’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/netcmc/new/netcmc.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘netcmc’ ... +** package ‘netcmc’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c choleskyDecompositionRcppConversion.cpp -o choleskyDecompositionRcppConversion.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleMatrixMultiplicationRcpp.cpp -o doubleMatrixMultiplicationRcpp.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleVectorMultiplicationRcpp.cpp -o doubleVectorMultiplicationRcpp.o +... +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c vectorVectorTransposeMultiplicationRcpp.cpp -o vectorVectorTransposeMultiplicationRcpp.o +g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o netcmc.so RcppExports.o choleskyDecompositionRcppConversion.o doubleMatrixMultiplicationRcpp.o doubleVectorMultiplicationRcpp.o eigenValuesRcppConversion.o getDiagonalMatrix.o getExp.o getExpDividedByOnePlusExp.o getMeanCenteredRandomEffects.o getMultivariateBinomialNetworkLerouxDIC.o getMultivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariateGaussianNetworkLerouxDIC.o getMultivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariatePoissonNetworkLerouxDIC.o getMultivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getNonZeroEntries.o getSubvector.o getSubvectorIndecies.o getSumExpNetwork.o getSumExpNetworkIndecies.o getSumExpNetworkLeroux.o getSumExpNetworkLerouxIndecies.o getSumLogExp.o getSumLogExpIndecies.o getSumVector.o getTripletForm.o getUnivariateBinomialNetworkLerouxDIC.o getUnivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariateGaussianNetworkLerouxDIC.o getUnivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkDIC.o getUnivariatePoissonNetworkFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkLerouxDIC.o getUnivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getVectorMean.o matrixInverseRcppConversion.o matrixMatrixAdditionRcpp.o matrixMatrixSubtractionRcpp.o matrixVectorMultiplicationRcpp.o multivariateBinomialNetworkLerouxAllUpdate.o multivariateBinomialNetworkLerouxBetaUpdate.o multivariateBinomialNetworkLerouxRhoUpdate.o multivariateBinomialNetworkLerouxSingleUpdate.o multivariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o multivariateBinomialNetworkLerouxTauSquaredUpdate.o multivariateBinomialNetworkLerouxURandomEffectsUpdate.o multivariateBinomialNetworkLerouxVRandomEffectsUpdate.o multivariateBinomialNetworkLerouxVarianceCovarianceUUpdate.o multivariateBinomialNetworkRandAllUpdate.o multivariateBinomialNetworkRandSingleUpdate.o multivariateGaussianNetworkLerouxAllMHUpdate.o multivariateGaussianNetworkLerouxBetaUpdate.o multivariateGaussianNetworkLerouxRhoUpdate.o multivariateGaussianNetworkLerouxSigmaSquaredEUpdate.o multivariateGaussianNetworkLerouxSingleMHUpdate.o multivariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o multivariateGaussianNetworkLerouxTauSquaredUpdate.o multivariateGaussianNetworkLerouxURandomEffectsUpdate.o multivariateGaussianNetworkLerouxVarianceCovarianceUUpdate.o multivariateGaussianNetworkRandAllUpdate.o multivariateGaussianNetworkRandSingleUpdate.o multivariateGaussianNetworkRandVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxAllUpdate.o multivariatePoissonNetworkLerouxBetaUpdate.o multivariatePoissonNetworkLerouxRhoUpdate.o multivariatePoissonNetworkLerouxSingleUpdate.o multivariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o multivariatePoissonNetworkLerouxTauSquaredUpdate.o multivariatePoissonNetworkLerouxURandomEffectsUpdate.o multivariatePoissonNetworkLerouxVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxVarianceCovarianceUUpdate.o multivariatePoissonNetworkRandAllUpdate.o multivariatePoissonNetworkRandSingleUpdate.o sumMatrix.o univariateBinomialNetworkLerouxAllUpdate.o univariateBinomialNetworkLerouxBetaUpdate.o univariateBinomialNetworkLerouxRhoUpdate.o univariateBinomialNetworkLerouxSigmaSquaredUpdate.o univariateBinomialNetworkLerouxSingleUpdate.o univariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o univariateBinomialNetworkLerouxTauSquaredUpdate.o univariateBinomialNetworkLerouxURandomEffectsUpdate.o univariateGaussianNetworkLerouxAllMHUpdate.o univariateGaussianNetworkLerouxBetaUpdate.o univariateGaussianNetworkLerouxRhoUpdate.o univariateGaussianNetworkLerouxSigmaSquaredEUpdate.o univariateGaussianNetworkLerouxSigmaSquaredUUpdate.o univariateGaussianNetworkLerouxSingleMHUpdate.o univariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o univariateGaussianNetworkLerouxTauSquaredUpdate.o univariateGaussianNetworkLerouxURandomEffectsUpdate.o univariatePoissonNetworkLerouxAllUpdate.o univariatePoissonNetworkLerouxBetaUpdate.o univariatePoissonNetworkLerouxRhoUpdate.o univariatePoissonNetworkLerouxSigmaSquaredUpdate.o univariatePoissonNetworkLerouxSingleUpdate.o univariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o univariatePoissonNetworkLerouxTauSquaredUpdate.o univariatePoissonNetworkLerouxURandomEffectsUpdate.o vectorTransposeVectorMultiplicationRcpp.o vectorVectorTransposeMultiplicationRcpp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/netcmc/new/netcmc.Rcheck/00LOCK-netcmc/00new/netcmc/libs +** R +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘netcmc’ +* removing ‘/tmp/workdir/netcmc/new/netcmc.Rcheck/netcmc’ + + +``` +### CRAN + +``` +* installing *source* package ‘netcmc’ ... +** package ‘netcmc’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c choleskyDecompositionRcppConversion.cpp -o choleskyDecompositionRcppConversion.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleMatrixMultiplicationRcpp.cpp -o doubleMatrixMultiplicationRcpp.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c doubleVectorMultiplicationRcpp.cpp -o doubleVectorMultiplicationRcpp.o +... +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -fpic -g -O2 -c vectorVectorTransposeMultiplicationRcpp.cpp -o vectorVectorTransposeMultiplicationRcpp.o +g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o netcmc.so RcppExports.o choleskyDecompositionRcppConversion.o doubleMatrixMultiplicationRcpp.o doubleVectorMultiplicationRcpp.o eigenValuesRcppConversion.o getDiagonalMatrix.o getExp.o getExpDividedByOnePlusExp.o getMeanCenteredRandomEffects.o getMultivariateBinomialNetworkLerouxDIC.o getMultivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariateGaussianNetworkLerouxDIC.o getMultivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getMultivariatePoissonNetworkLerouxDIC.o getMultivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getNonZeroEntries.o getSubvector.o getSubvectorIndecies.o getSumExpNetwork.o getSumExpNetworkIndecies.o getSumExpNetworkLeroux.o getSumExpNetworkLerouxIndecies.o getSumLogExp.o getSumLogExpIndecies.o getSumVector.o getTripletForm.o getUnivariateBinomialNetworkLerouxDIC.o getUnivariateBinomialNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariateGaussianNetworkLerouxDIC.o getUnivariateGaussianNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkDIC.o getUnivariatePoissonNetworkFittedValuesAndLikelihoodForDICEveryIteration.o getUnivariatePoissonNetworkLerouxDIC.o getUnivariatePoissonNetworkLerouxFittedValuesAndLikelihoodForDICEveryIteration.o getVectorMean.o matrixInverseRcppConversion.o matrixMatrixAdditionRcpp.o matrixMatrixSubtractionRcpp.o matrixVectorMultiplicationRcpp.o multivariateBinomialNetworkLerouxAllUpdate.o multivariateBinomialNetworkLerouxBetaUpdate.o multivariateBinomialNetworkLerouxRhoUpdate.o multivariateBinomialNetworkLerouxSingleUpdate.o multivariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o multivariateBinomialNetworkLerouxTauSquaredUpdate.o multivariateBinomialNetworkLerouxURandomEffectsUpdate.o multivariateBinomialNetworkLerouxVRandomEffectsUpdate.o multivariateBinomialNetworkLerouxVarianceCovarianceUUpdate.o multivariateBinomialNetworkRandAllUpdate.o multivariateBinomialNetworkRandSingleUpdate.o multivariateGaussianNetworkLerouxAllMHUpdate.o multivariateGaussianNetworkLerouxBetaUpdate.o multivariateGaussianNetworkLerouxRhoUpdate.o multivariateGaussianNetworkLerouxSigmaSquaredEUpdate.o multivariateGaussianNetworkLerouxSingleMHUpdate.o multivariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o multivariateGaussianNetworkLerouxTauSquaredUpdate.o multivariateGaussianNetworkLerouxURandomEffectsUpdate.o multivariateGaussianNetworkLerouxVarianceCovarianceUUpdate.o multivariateGaussianNetworkRandAllUpdate.o multivariateGaussianNetworkRandSingleUpdate.o multivariateGaussianNetworkRandVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxAllUpdate.o multivariatePoissonNetworkLerouxBetaUpdate.o multivariatePoissonNetworkLerouxRhoUpdate.o multivariatePoissonNetworkLerouxSingleUpdate.o multivariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o multivariatePoissonNetworkLerouxTauSquaredUpdate.o multivariatePoissonNetworkLerouxURandomEffectsUpdate.o multivariatePoissonNetworkLerouxVRandomEffectsUpdate.o multivariatePoissonNetworkLerouxVarianceCovarianceUUpdate.o multivariatePoissonNetworkRandAllUpdate.o multivariatePoissonNetworkRandSingleUpdate.o sumMatrix.o univariateBinomialNetworkLerouxAllUpdate.o univariateBinomialNetworkLerouxBetaUpdate.o univariateBinomialNetworkLerouxRhoUpdate.o univariateBinomialNetworkLerouxSigmaSquaredUpdate.o univariateBinomialNetworkLerouxSingleUpdate.o univariateBinomialNetworkLerouxSpatialRandomEffectsUpdate.o univariateBinomialNetworkLerouxTauSquaredUpdate.o univariateBinomialNetworkLerouxURandomEffectsUpdate.o univariateGaussianNetworkLerouxAllMHUpdate.o univariateGaussianNetworkLerouxBetaUpdate.o univariateGaussianNetworkLerouxRhoUpdate.o univariateGaussianNetworkLerouxSigmaSquaredEUpdate.o univariateGaussianNetworkLerouxSigmaSquaredUUpdate.o univariateGaussianNetworkLerouxSingleMHUpdate.o univariateGaussianNetworkLerouxSpatialRandomEffectsMHUpdate.o univariateGaussianNetworkLerouxTauSquaredUpdate.o univariateGaussianNetworkLerouxURandomEffectsUpdate.o univariatePoissonNetworkLerouxAllUpdate.o univariatePoissonNetworkLerouxBetaUpdate.o univariatePoissonNetworkLerouxRhoUpdate.o univariatePoissonNetworkLerouxSigmaSquaredUpdate.o univariatePoissonNetworkLerouxSingleUpdate.o univariatePoissonNetworkLerouxSpatialRandomEffectsUpdate.o univariatePoissonNetworkLerouxTauSquaredUpdate.o univariatePoissonNetworkLerouxURandomEffectsUpdate.o vectorTransposeVectorMultiplicationRcpp.o vectorVectorTransposeMultiplicationRcpp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/netcmc/old/netcmc.Rcheck/00LOCK-netcmc/00new/netcmc/libs +** R +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘netcmc’ +* removing ‘/tmp/workdir/netcmc/old/netcmc.Rcheck/netcmc’ + + +``` +# NetworkChange + +
+ +* Version: 0.8 +* GitHub: https://github.com/jongheepark/NetworkChange +* Source code: https://github.com/cran/NetworkChange +* Date/Publication: 2022-03-04 07:30:02 UTC +* Number of recursive dependencies: 132 + +Run `revdepcheck::cloud_details(, "NetworkChange")` for more info + +
+ +## In both + +* checking whether package ‘NetworkChange’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/NetworkChange/new/NetworkChange.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘NetworkChange’ ... +** package ‘NetworkChange’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘NetworkChange’ +* removing ‘/tmp/workdir/NetworkChange/new/NetworkChange.Rcheck/NetworkChange’ + + +``` +### CRAN + +``` +* installing *source* package ‘NetworkChange’ ... +** package ‘NetworkChange’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘NetworkChange’ +* removing ‘/tmp/workdir/NetworkChange/old/NetworkChange.Rcheck/NetworkChange’ + + +``` +# nlmeVPC + +
+ +* Version: 2.6 +* GitHub: NA +* Source code: https://github.com/cran/nlmeVPC +* Date/Publication: 2022-12-22 05:20:02 UTC +* Number of recursive dependencies: 91 + +Run `revdepcheck::cloud_details(, "nlmeVPC")` for more info + +
+ +## In both + +* checking whether package ‘nlmeVPC’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/nlmeVPC/new/nlmeVPC.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘nlmeVPC’ ... +** package ‘nlmeVPC’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Misc.cpp -o Misc.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o nlmeVPC.so Misc.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/nlmeVPC/new/nlmeVPC.Rcheck/00LOCK-nlmeVPC/00new/nlmeVPC/libs +** R +** data +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘nlmeVPC’ +* removing ‘/tmp/workdir/nlmeVPC/new/nlmeVPC.Rcheck/nlmeVPC’ + + +``` +### CRAN + +``` +* installing *source* package ‘nlmeVPC’ ... +** package ‘nlmeVPC’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Misc.cpp -o Misc.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o nlmeVPC.so Misc.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/nlmeVPC/old/nlmeVPC.Rcheck/00LOCK-nlmeVPC/00new/nlmeVPC/libs +** R +** data +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘nlmeVPC’ +* removing ‘/tmp/workdir/nlmeVPC/old/nlmeVPC.Rcheck/nlmeVPC’ + + +``` +# NMADiagT + +
+ +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/NMADiagT +* Date/Publication: 2020-02-26 07:00:02 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "NMADiagT")` for more info + +
+ +## In both + +* checking whether package ‘NMADiagT’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/NMADiagT/new/NMADiagT.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘NMADiagT’ ... +** package ‘NMADiagT’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘NMADiagT’ +* removing ‘/tmp/workdir/NMADiagT/new/NMADiagT.Rcheck/NMADiagT’ + + +``` +### CRAN + +``` +* installing *source* package ‘NMADiagT’ ... +** package ‘NMADiagT’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘NMADiagT’ +* removing ‘/tmp/workdir/NMADiagT/old/NMADiagT.Rcheck/NMADiagT’ + + +``` +# optweight + +
+ +* Version: 0.2.5 +* GitHub: NA +* Source code: https://github.com/cran/optweight +* Date/Publication: 2019-09-16 15:40:02 UTC +* Number of recursive dependencies: 55 + +Run `revdepcheck::cloud_details(, "optweight")` for more info + +
+ +## In both + +* checking whether package ‘optweight’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/optweight/new/optweight.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘optweight’ ... +** package ‘optweight’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘optweight’ +* removing ‘/tmp/workdir/optweight/new/optweight.Rcheck/optweight’ + + +``` +### CRAN + +``` +* installing *source* package ‘optweight’ ... +** package ‘optweight’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘optweight’ +* removing ‘/tmp/workdir/optweight/old/optweight.Rcheck/optweight’ + + +``` +# OVtool + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/OVtool +* Date/Publication: 2021-11-02 08:10:07 UTC +* Number of recursive dependencies: 158 + +Run `revdepcheck::cloud_details(, "OVtool")` for more info + +
+ +## In both + +* checking whether package ‘OVtool’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘OVtool’ ... +** package ‘OVtool’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘OVtool’ +* removing ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/OVtool’ + + +``` +### CRAN + +``` +* installing *source* package ‘OVtool’ ... +** package ‘OVtool’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘OVtool’ +* removing ‘/tmp/workdir/OVtool/old/OVtool.Rcheck/OVtool’ + + +``` +# paths + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/paths +* Date/Publication: 2021-06-18 08:40:02 UTC +* Number of recursive dependencies: 103 + +Run `revdepcheck::cloud_details(, "paths")` for more info + +
+ +## In both + +* checking whether package ‘paths’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/paths/new/paths.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘paths’ ... +** package ‘paths’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘paths’ +* removing ‘/tmp/workdir/paths/new/paths.Rcheck/paths’ + + +``` +### CRAN + +``` +* installing *source* package ‘paths’ ... +** package ‘paths’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘paths’ +* removing ‘/tmp/workdir/paths/old/paths.Rcheck/paths’ + + +``` +# PLMIX + +
+ +* Version: 2.1.1 +* GitHub: NA +* Source code: https://github.com/cran/PLMIX +* Date/Publication: 2019-09-04 11:50:02 UTC +* Number of recursive dependencies: 151 + +Run `revdepcheck::cloud_details(, "PLMIX")` for more info + +
+ +## In both + +* checking whether package ‘PLMIX’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/PLMIX/new/PLMIX.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘PLMIX’ ... +** package ‘PLMIX’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompProbZpartial.cpp -o CompProbZpartial.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateP.cpp -o CompRateP.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateYpartial.cpp -o CompRateYpartial.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Estep.cpp -o Estep.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c PLMIXsim.cpp -o PLMIXsim.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘PLMIX’ +* removing ‘/tmp/workdir/PLMIX/new/PLMIX.Rcheck/PLMIX’ + + +``` +### CRAN + +``` +* installing *source* package ‘PLMIX’ ... +** package ‘PLMIX’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompProbZpartial.cpp -o CompProbZpartial.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateP.cpp -o CompRateP.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c CompRateYpartial.cpp -o CompRateYpartial.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c Estep.cpp -o Estep.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c PLMIXsim.cpp -o PLMIXsim.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘PLMIX’ +* removing ‘/tmp/workdir/PLMIX/old/PLMIX.Rcheck/PLMIX’ + + +``` +# popstudy + +
+ +* Version: 1.0.1 +* GitHub: NA +* Source code: https://github.com/cran/popstudy +* Date/Publication: 2023-10-17 23:50:02 UTC +* Number of recursive dependencies: 236 + +Run `revdepcheck::cloud_details(, "popstudy")` for more info + +
+ +## In both + +* checking whether package ‘popstudy’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/popstudy/new/popstudy.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘popstudy’ ... +** package ‘popstudy’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘popstudy’ +* removing ‘/tmp/workdir/popstudy/new/popstudy.Rcheck/popstudy’ + + +``` +### CRAN + +``` +* installing *source* package ‘popstudy’ ... +** package ‘popstudy’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘popstudy’ +* removing ‘/tmp/workdir/popstudy/old/popstudy.Rcheck/popstudy’ + + +``` +# pould + +
+ +* Version: 1.0.1 +* GitHub: NA +* Source code: https://github.com/cran/pould +* Date/Publication: 2020-10-16 13:50:03 UTC +* Number of recursive dependencies: 104 + +Run `revdepcheck::cloud_details(, "pould")` for more info + +
+ +## In both + +* checking whether package ‘pould’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/pould/new/pould.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘pould’ ... +** package ‘pould’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘pould’ +* removing ‘/tmp/workdir/pould/new/pould.Rcheck/pould’ + + +``` +### CRAN + +``` +* installing *source* package ‘pould’ ... +** package ‘pould’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘pould’ +* removing ‘/tmp/workdir/pould/old/pould.Rcheck/pould’ + + +``` +# powerly + +
+ +* Version: 1.8.6 +* GitHub: https://github.com/mihaiconstantin/powerly +* Source code: https://github.com/cran/powerly +* Date/Publication: 2022-09-09 14:10:01 UTC +* Number of recursive dependencies: 176 + +Run `revdepcheck::cloud_details(, "powerly")` for more info + +
+ +## In both + +* checking whether package ‘powerly’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/powerly/new/powerly.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘powerly’ ... +** package ‘powerly’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘powerly’ +* removing ‘/tmp/workdir/powerly/new/powerly.Rcheck/powerly’ + + +``` +### CRAN + +``` +* installing *source* package ‘powerly’ ... +** package ‘powerly’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘powerly’ +* removing ‘/tmp/workdir/powerly/old/powerly.Rcheck/powerly’ + + +``` +# pre + +
+ +* Version: 1.0.7 +* GitHub: https://github.com/marjoleinF/pre +* Source code: https://github.com/cran/pre +* Date/Publication: 2024-01-12 19:30:02 UTC +* Number of recursive dependencies: 152 + +Run `revdepcheck::cloud_details(, "pre")` for more info + +
+ +## In both + +* checking whether package ‘pre’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/pre/new/pre.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘pre’ ... +** package ‘pre’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘pre’ +* removing ‘/tmp/workdir/pre/new/pre.Rcheck/pre’ + + +``` +### CRAN + +``` +* installing *source* package ‘pre’ ... +** package ‘pre’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘pre’ +* removing ‘/tmp/workdir/pre/old/pre.Rcheck/pre’ + + +``` +# PRECAST + +
+ +* Version: 1.6.5 +* GitHub: https://github.com/feiyoung/PRECAST +* Source code: https://github.com/cran/PRECAST +* Date/Publication: 2024-03-19 08:30:02 UTC +* Number of recursive dependencies: 225 + +Run `revdepcheck::cloud_details(, "PRECAST")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/PRECAST/new/PRECAST.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘PRECAST/DESCRIPTION’ ... OK +... +* this is package ‘PRECAST’ version ‘1.6.5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'Seurat', 'DR.SC' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/PRECAST/old/PRECAST.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘PRECAST/DESCRIPTION’ ... OK +... +* this is package ‘PRECAST’ version ‘1.6.5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'Seurat', 'DR.SC' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# ProFAST + +
+ +* Version: 1.4 +* GitHub: https://github.com/feiyoung/ProFAST +* Source code: https://github.com/cran/ProFAST +* Date/Publication: 2024-03-18 08:10:06 UTC +* Number of recursive dependencies: 253 + +Run `revdepcheck::cloud_details(, "ProFAST")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/ProFAST/new/ProFAST.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ProFAST/DESCRIPTION’ ... OK +... +* this is package ‘ProFAST’ version ‘1.4’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'DR.SC', 'PRECAST', 'Seurat' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/ProFAST/old/ProFAST.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ProFAST/DESCRIPTION’ ... OK +... +* this is package ‘ProFAST’ version ‘1.4’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'DR.SC', 'PRECAST', 'Seurat' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# pscore + +
+ +* Version: 0.4.0 +* GitHub: https://github.com/JWiley/score-project +* Source code: https://github.com/cran/pscore +* Date/Publication: 2022-05-13 22:30:02 UTC +* Number of recursive dependencies: 165 + +Run `revdepcheck::cloud_details(, "pscore")` for more info + +
+ +## In both + +* checking whether package ‘pscore’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/pscore/new/pscore.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘pscore’ ... +** package ‘pscore’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘pscore’ +* removing ‘/tmp/workdir/pscore/new/pscore.Rcheck/pscore’ + + +``` +### CRAN + +``` +* installing *source* package ‘pscore’ ... +** package ‘pscore’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘pscore’ +* removing ‘/tmp/workdir/pscore/old/pscore.Rcheck/pscore’ + + +``` +# psfmi + +
+ +* Version: 1.4.0 +* GitHub: https://github.com/mwheymans/psfmi +* Source code: https://github.com/cran/psfmi +* Date/Publication: 2023-06-17 22:40:02 UTC +* Number of recursive dependencies: 160 + +Run `revdepcheck::cloud_details(, "psfmi")` for more info + +
+ +## In both + +* checking whether package ‘psfmi’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/psfmi/new/psfmi.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘psfmi’ ... +** package ‘psfmi’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘psfmi’ +* removing ‘/tmp/workdir/psfmi/new/psfmi.Rcheck/psfmi’ + + +``` +### CRAN + +``` +* installing *source* package ‘psfmi’ ... +** package ‘psfmi’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘psfmi’ +* removing ‘/tmp/workdir/psfmi/old/psfmi.Rcheck/psfmi’ + + +``` +# qreport + +
+ +* Version: 1.0-0 +* GitHub: NA +* Source code: https://github.com/cran/qreport +* Date/Publication: 2023-09-12 22:10:02 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "qreport")` for more info + +
+ +## In both + +* checking whether package ‘qreport’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/qreport/new/qreport.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘qreport’ ... +** package ‘qreport’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘qreport’ +* removing ‘/tmp/workdir/qreport/new/qreport.Rcheck/qreport’ + + +``` +### CRAN + +``` +* installing *source* package ‘qreport’ ... +** package ‘qreport’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘qreport’ +* removing ‘/tmp/workdir/qreport/old/qreport.Rcheck/qreport’ + + +``` +# qris + +
+ +* Version: 1.1.1 +* GitHub: https://github.com/Kyuhyun07/qris +* Source code: https://github.com/cran/qris +* Date/Publication: 2024-03-05 14:40:03 UTC +* Number of recursive dependencies: 55 + +Run `revdepcheck::cloud_details(, "qris")` for more info + +
+ +## In both + +* checking whether package ‘qris’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/qris/new/qris.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘qris’ ... +** package ‘qris’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Amat.cpp -o Amat.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c ghat.cpp -o ghat.o +... +installing to /tmp/workdir/qris/new/qris.Rcheck/00LOCK-qris/00new/qris/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘qris’ +* removing ‘/tmp/workdir/qris/new/qris.Rcheck/qris’ + + +``` +### CRAN + +``` +* installing *source* package ‘qris’ ... +** package ‘qris’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++11 +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Amat.cpp -o Amat.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c ghat.cpp -o ghat.o +... +installing to /tmp/workdir/qris/old/qris.Rcheck/00LOCK-qris/00new/qris/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘qris’ +* removing ‘/tmp/workdir/qris/old/qris.Rcheck/qris’ + + +``` +# qte + +
+ +* Version: 1.3.1 +* GitHub: NA +* Source code: https://github.com/cran/qte +* Date/Publication: 2022-09-01 14:30:02 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "qte")` for more info + +
+ +## In both + +* checking whether package ‘qte’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/qte/new/qte.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘qte’ ... +** package ‘qte’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘qte’ +* removing ‘/tmp/workdir/qte/new/qte.Rcheck/qte’ + + +``` +### CRAN + +``` +* installing *source* package ‘qte’ ... +** package ‘qte’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘qte’ +* removing ‘/tmp/workdir/qte/old/qte.Rcheck/qte’ + + +``` +# quid + +
+ +* Version: 0.0.1 +* GitHub: NA +* Source code: https://github.com/cran/quid +* Date/Publication: 2021-12-09 09:00:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "quid")` for more info + +
+ +## In both + +* checking whether package ‘quid’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/quid/new/quid.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘quid’ ... +** package ‘quid’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘quid’ +* removing ‘/tmp/workdir/quid/new/quid.Rcheck/quid’ + + +``` +### CRAN + +``` +* installing *source* package ‘quid’ ... +** package ‘quid’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘quid’ +* removing ‘/tmp/workdir/quid/old/quid.Rcheck/quid’ + + +``` +# RATest + +
+ +* Version: 0.1.10 +* GitHub: https://github.com/ignaciomsarmiento/RATest +* Source code: https://github.com/cran/RATest +* Date/Publication: 2022-09-29 04:30:02 UTC +* Number of recursive dependencies: 54 + +Run `revdepcheck::cloud_details(, "RATest")` for more info + +
+ +## In both + +* checking whether package ‘RATest’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/RATest/new/RATest.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘RATest’ ... +** package ‘RATest’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘RATest’ +* removing ‘/tmp/workdir/RATest/new/RATest.Rcheck/RATest’ + + +``` +### CRAN + +``` +* installing *source* package ‘RATest’ ... +** package ‘RATest’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘RATest’ +* removing ‘/tmp/workdir/RATest/old/RATest.Rcheck/RATest’ + + +``` +# RcmdrPlugin.RiskDemo + +
+ +* Version: 3.2 +* GitHub: NA +* Source code: https://github.com/cran/RcmdrPlugin.RiskDemo +* Date/Publication: 2024-02-06 09:20:02 UTC +* Number of recursive dependencies: 208 + +Run `revdepcheck::cloud_details(, "RcmdrPlugin.RiskDemo")` for more info + +
+ +## In both + +* checking whether package ‘RcmdrPlugin.RiskDemo’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/RcmdrPlugin.RiskDemo/new/RcmdrPlugin.RiskDemo.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘RcmdrPlugin.RiskDemo’ ... +** package ‘RcmdrPlugin.RiskDemo’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘RcmdrPlugin.RiskDemo’ +* removing ‘/tmp/workdir/RcmdrPlugin.RiskDemo/new/RcmdrPlugin.RiskDemo.Rcheck/RcmdrPlugin.RiskDemo’ + + +``` +### CRAN + +``` +* installing *source* package ‘RcmdrPlugin.RiskDemo’ ... +** package ‘RcmdrPlugin.RiskDemo’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘RcmdrPlugin.RiskDemo’ +* removing ‘/tmp/workdir/RcmdrPlugin.RiskDemo/old/RcmdrPlugin.RiskDemo.Rcheck/RcmdrPlugin.RiskDemo’ + + +``` +# rddtools + +
+ +* Version: 1.6.0 +* GitHub: https://github.com/bquast/rddtools +* Source code: https://github.com/cran/rddtools +* Date/Publication: 2022-01-10 12:42:49 UTC +* Number of recursive dependencies: 102 + +Run `revdepcheck::cloud_details(, "rddtools")` for more info + +
+ +## In both + +* checking whether package ‘rddtools’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rddtools’ ... +** package ‘rddtools’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘rddtools’ +* removing ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/rddtools’ + + +``` +### CRAN + +``` +* installing *source* package ‘rddtools’ ... +** package ‘rddtools’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘rddtools’ +* removing ‘/tmp/workdir/rddtools/old/rddtools.Rcheck/rddtools’ + + +``` +# riskRegression + +
+ +* Version: 2023.12.21 +* GitHub: https://github.com/tagteam/riskRegression +* Source code: https://github.com/cran/riskRegression +* Date/Publication: 2023-12-19 17:00:02 UTC +* Number of recursive dependencies: 186 + +Run `revdepcheck::cloud_details(, "riskRegression")` for more info + +
+ +## In both + +* checking whether package ‘riskRegression’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/riskRegression/new/riskRegression.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘riskRegression’ ... +** package ‘riskRegression’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c IC-Nelson-Aalen-cens-time.cpp -o IC-Nelson-Aalen-cens-time.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c aucCVFun.cpp -o aucCVFun.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c baseHaz.cpp -o baseHaz.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c calcSeCSC.cpp -o calcSeCSC.o +... +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘riskRegression’ +* removing ‘/tmp/workdir/riskRegression/new/riskRegression.Rcheck/riskRegression’ + + +``` +### CRAN + +``` +* installing *source* package ‘riskRegression’ ... +** package ‘riskRegression’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c IC-Nelson-Aalen-cens-time.cpp -o IC-Nelson-Aalen-cens-time.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c aucCVFun.cpp -o aucCVFun.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c baseHaz.cpp -o baseHaz.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c calcSeCSC.cpp -o calcSeCSC.o +... +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘riskRegression’ +* removing ‘/tmp/workdir/riskRegression/old/riskRegression.Rcheck/riskRegression’ + + +``` +# rliger + +
+ +* Version: 2.0.1 +* GitHub: https://github.com/welch-lab/liger +* Source code: https://github.com/cran/rliger +* Date/Publication: 2024-04-04 23:20:02 UTC +* Number of recursive dependencies: 218 + +Run `revdepcheck::cloud_details(, "rliger")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/rliger/new/rliger.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘rliger/DESCRIPTION’ ... OK +... + [ FAIL 1 | WARN 0 | SKIP 5 | PASS 1234 ] + Error: Test failures + Execution halted +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘liger-vignette.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 2 ERRORs, 2 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/rliger/old/rliger.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘rliger/DESCRIPTION’ ... OK +... + [ FAIL 1 | WARN 0 | SKIP 5 | PASS 1234 ] + Error: Test failures + Execution halted +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... OK + ‘liger-vignette.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 2 ERRORs, 2 NOTEs + + + + + +``` +# rms + +
+ +* Version: 6.8-0 +* GitHub: https://github.com/harrelfe/rms +* Source code: https://github.com/cran/rms +* Date/Publication: 2024-03-11 16:20:02 UTC +* Number of recursive dependencies: 154 + +Run `revdepcheck::cloud_details(, "rms")` for more info + +
+ +## In both + +* checking whether package ‘rms’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/rms/new/rms.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘rmsb’ + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rms’ ... +** package ‘rms’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o +gfortran -fpic -g -O2 -c lrmfit.f -o lrmfit.o +gfortran -fpic -g -O2 -c mlmats.f -o mlmats.o +gfortran -fpic -g -O2 -c ormuv.f -o ormuv.o +... +** R +** demo +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘rms’ +* removing ‘/tmp/workdir/rms/new/rms.Rcheck/rms’ + + +``` +### CRAN + +``` +* installing *source* package ‘rms’ ... +** package ‘rms’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o +gfortran -fpic -g -O2 -c lrmfit.f -o lrmfit.o +gfortran -fpic -g -O2 -c mlmats.f -o mlmats.o +gfortran -fpic -g -O2 -c ormuv.f -o ormuv.o +... +** R +** demo +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘rms’ +* removing ‘/tmp/workdir/rms/old/rms.Rcheck/rms’ + + +``` +# rmsb + +
+ +* Version: 1.1-0 +* GitHub: NA +* Source code: https://github.com/cran/rmsb +* Date/Publication: 2024-03-12 15:50:02 UTC +* Number of recursive dependencies: 144 + +Run `revdepcheck::cloud_details(, "rmsb")` for more info + +
+ +## In both + +* checking whether package ‘rmsb’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rmsb’ ... +** package ‘rmsb’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘rmsb’ +* removing ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/rmsb’ + + +``` +### CRAN + +``` +* installing *source* package ‘rmsb’ ... +** package ‘rmsb’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘rmsb’ +* removing ‘/tmp/workdir/rmsb/old/rmsb.Rcheck/rmsb’ + + +``` +# robmed + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/aalfons/robmed +* Source code: https://github.com/cran/robmed +* Date/Publication: 2023-06-16 23:00:02 UTC +* Number of recursive dependencies: 60 + +Run `revdepcheck::cloud_details(, "robmed")` for more info + +
+ +## In both + +* checking whether package ‘robmed’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/robmed/new/robmed.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘robmed’ ... +** package ‘robmed’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘robmed’ +* removing ‘/tmp/workdir/robmed/new/robmed.Rcheck/robmed’ + + +``` +### CRAN + +``` +* installing *source* package ‘robmed’ ... +** package ‘robmed’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘robmed’ +* removing ‘/tmp/workdir/robmed/old/robmed.Rcheck/robmed’ + + +``` +# robmedExtra + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/aalfons/robmedExtra +* Source code: https://github.com/cran/robmedExtra +* Date/Publication: 2023-06-02 14:40:02 UTC +* Number of recursive dependencies: 96 + +Run `revdepcheck::cloud_details(, "robmedExtra")` for more info + +
+ +## In both + +* checking whether package ‘robmedExtra’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/robmedExtra/new/robmedExtra.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘robmedExtra’ ... +** package ‘robmedExtra’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘robmed’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘robmedExtra’ +* removing ‘/tmp/workdir/robmedExtra/new/robmedExtra.Rcheck/robmedExtra’ + + +``` +### CRAN + +``` +* installing *source* package ‘robmedExtra’ ... +** package ‘robmedExtra’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘robmed’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘robmedExtra’ +* removing ‘/tmp/workdir/robmedExtra/old/robmedExtra.Rcheck/robmedExtra’ + + +``` +# RPPanalyzer + +
+ +* Version: 1.4.9 +* GitHub: NA +* Source code: https://github.com/cran/RPPanalyzer +* Date/Publication: 2024-01-25 11:00:02 UTC +* Number of recursive dependencies: 82 + +Run `revdepcheck::cloud_details(, "RPPanalyzer")` for more info + +
+ +## In both + +* checking whether package ‘RPPanalyzer’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/RPPanalyzer/new/RPPanalyzer.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘RPPanalyzer’ ... +** package ‘RPPanalyzer’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘RPPanalyzer’ +* removing ‘/tmp/workdir/RPPanalyzer/new/RPPanalyzer.Rcheck/RPPanalyzer’ + + +``` +### CRAN + +``` +* installing *source* package ‘RPPanalyzer’ ... +** package ‘RPPanalyzer’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘RPPanalyzer’ +* removing ‘/tmp/workdir/RPPanalyzer/old/RPPanalyzer.Rcheck/RPPanalyzer’ + + +``` +# rstanarm + +
+ +* Version: 2.32.1 +* GitHub: https://github.com/stan-dev/rstanarm +* Source code: https://github.com/cran/rstanarm +* Date/Publication: 2024-01-18 23:00:03 UTC +* Number of recursive dependencies: 138 + +Run `revdepcheck::cloud_details(, "rstanarm")` for more info + +
+ +## In both + +* checking whether package ‘rstanarm’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rstanarm’ ... +** package ‘rstanarm’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 +"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan +Wrote C++ file "stan_files/bernoulli.cc" + + +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/bernoulli.o] Error 1 +rm stan_files/bernoulli.cc +ERROR: compilation failed for package ‘rstanarm’ +* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’ + + +``` +### CRAN + +``` +* installing *source* package ‘rstanarm’ ... +** package ‘rstanarm’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 +"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan +Wrote C++ file "stan_files/bernoulli.cc" + + +... +/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/bernoulli.o] Error 1 +rm stan_files/bernoulli.cc +ERROR: compilation failed for package ‘rstanarm’ +* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’ + + +``` +# scCustomize + +
+ +* Version: 2.1.2 +* GitHub: https://github.com/samuel-marsh/scCustomize +* Source code: https://github.com/cran/scCustomize +* Date/Publication: 2024-02-28 19:40:02 UTC +* Number of recursive dependencies: 274 + +Run `revdepcheck::cloud_details(, "scCustomize")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scCustomize/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'Seurat', 'SeuratObject' + +Package suggested but not available for checking: ‘Nebulosa’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scCustomize/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'Seurat', 'SeuratObject' + +Package suggested but not available for checking: ‘Nebulosa’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# SCdeconR + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/Liuy12/SCdeconR +* Source code: https://github.com/cran/SCdeconR +* Date/Publication: 2024-03-22 19:20:02 UTC +* Number of recursive dependencies: 235 + +Run `revdepcheck::cloud_details(, "SCdeconR")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/SCdeconR/new/SCdeconR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SCdeconR/DESCRIPTION’ ... OK +... +* this is package ‘SCdeconR’ version ‘1.0.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/SCdeconR/old/SCdeconR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SCdeconR/DESCRIPTION’ ... OK +... +* this is package ‘SCdeconR’ version ‘1.0.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# scDiffCom + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/scDiffCom +* Date/Publication: 2023-11-03 18:40:02 UTC +* Number of recursive dependencies: 259 + +Run `revdepcheck::cloud_details(, "scDiffCom")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/scDiffCom/new/scDiffCom.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scDiffCom/DESCRIPTION’ ... OK +... +* this is package ‘scDiffCom’ version ‘1.0.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/scDiffCom/old/scDiffCom.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scDiffCom/DESCRIPTION’ ... OK +... +* this is package ‘scDiffCom’ version ‘1.0.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# scGate + +
+ +* Version: 1.6.2 +* GitHub: https://github.com/carmonalab/scGate +* Source code: https://github.com/cran/scGate +* Date/Publication: 2024-04-23 08:50:02 UTC +* Number of recursive dependencies: 178 + +Run `revdepcheck::cloud_details(, "scGate")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/scGate/new/scGate.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scGate/DESCRIPTION’ ... OK +... +* this is package ‘scGate’ version ‘1.6.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/scGate/old/scGate.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scGate/DESCRIPTION’ ... OK +... +* this is package ‘scGate’ version ‘1.6.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# scMappR + +
+ +* Version: 1.0.11 +* GitHub: NA +* Source code: https://github.com/cran/scMappR +* Date/Publication: 2023-06-30 08:40:08 UTC +* Number of recursive dependencies: 233 + +Run `revdepcheck::cloud_details(, "scMappR")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/scMappR/new/scMappR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scMappR/DESCRIPTION’ ... OK +... +* this is package ‘scMappR’ version ‘1.0.11’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/scMappR/old/scMappR.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scMappR/DESCRIPTION’ ... OK +... +* this is package ‘scMappR’ version ‘1.0.11’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# SCORPIUS + +
+ +* Version: 1.0.9 +* GitHub: https://github.com/rcannood/SCORPIUS +* Source code: https://github.com/cran/SCORPIUS +* Date/Publication: 2023-08-07 17:30:05 UTC +* Number of recursive dependencies: 202 + +Run `revdepcheck::cloud_details(, "SCORPIUS")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/SCORPIUS/new/SCORPIUS.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SCORPIUS/DESCRIPTION’ ... OK +... +Run `reticulate::py_last_error()` for details. +Execution halted + + ‘anndata.Rmd’ using ‘UTF-8’... failed + ‘ginhoux.Rmd’ using ‘UTF-8’... OK + ‘simulated-data.Rmd’ using ‘UTF-8’... OK + ‘singlecellexperiment.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 ERROR, 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/SCORPIUS/old/SCORPIUS.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SCORPIUS/DESCRIPTION’ ... OK +... +Run `reticulate::py_last_error()` for details. +Execution halted + + ‘anndata.Rmd’ using ‘UTF-8’... failed + ‘ginhoux.Rmd’ using ‘UTF-8’... OK + ‘simulated-data.Rmd’ using ‘UTF-8’... OK + ‘singlecellexperiment.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 ERROR, 1 NOTE + + + + + +``` +# scpoisson + +
+ +* Version: 0.0.1 +* GitHub: NA +* Source code: https://github.com/cran/scpoisson +* Date/Publication: 2022-08-17 06:50:02 UTC +* Number of recursive dependencies: 203 + +Run `revdepcheck::cloud_details(, "scpoisson")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/scpoisson/new/scpoisson.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scpoisson/DESCRIPTION’ ... OK +... +* this is package ‘scpoisson’ version ‘0.0.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'Seurat', 'SeuratObject' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/scpoisson/old/scpoisson.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scpoisson/DESCRIPTION’ ... OK +... +* this is package ‘scpoisson’ version ‘0.0.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'Seurat', 'SeuratObject' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# SCpubr + +
+ +* Version: 2.0.2 +* GitHub: https://github.com/enblacar/SCpubr +* Source code: https://github.com/cran/SCpubr +* Date/Publication: 2023-10-11 09:50:02 UTC +* Number of recursive dependencies: 306 + +Run `revdepcheck::cloud_details(, "SCpubr")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/SCpubr/new/SCpubr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SCpubr/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘reference_manual.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 2 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/SCpubr/old/SCpubr.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SCpubr/DESCRIPTION’ ... OK +... +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘reference_manual.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 2 NOTEs + + + + + +``` +# scRNAstat + +
+ +* Version: 0.1.1 +* GitHub: NA +* Source code: https://github.com/cran/scRNAstat +* Date/Publication: 2021-09-22 08:10:02 UTC +* Number of recursive dependencies: 155 + +Run `revdepcheck::cloud_details(, "scRNAstat")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/scRNAstat/new/scRNAstat.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scRNAstat/DESCRIPTION’ ... OK +... +* this is package ‘scRNAstat’ version ‘0.1.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/scRNAstat/old/scRNAstat.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘scRNAstat/DESCRIPTION’ ... OK +... +* this is package ‘scRNAstat’ version ‘0.1.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# sectorgap + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/sectorgap +* Date/Publication: 2024-01-22 17:40:02 UTC +* Number of recursive dependencies: 46 + +Run `revdepcheck::cloud_details(, "sectorgap")` for more info + +
+ +## In both + +* checking whether package ‘sectorgap’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/sectorgap/new/sectorgap.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘sectorgap’ ... +** package ‘sectorgap’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘sectorgap’ +* removing ‘/tmp/workdir/sectorgap/new/sectorgap.Rcheck/sectorgap’ + + +``` +### CRAN + +``` +* installing *source* package ‘sectorgap’ ... +** package ‘sectorgap’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘sectorgap’ +* removing ‘/tmp/workdir/sectorgap/old/sectorgap.Rcheck/sectorgap’ + + +``` +# SEERaBomb + +
+ +* Version: 2019.2 +* GitHub: NA +* Source code: https://github.com/cran/SEERaBomb +* Date/Publication: 2019-12-12 18:50:03 UTC +* Number of recursive dependencies: 184 + +Run `revdepcheck::cloud_details(, "SEERaBomb")` for more info + +
+ +## In both + +* checking whether package ‘SEERaBomb’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/SEERaBomb/new/SEERaBomb.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘SEERaBomb’ ... +** package ‘SEERaBomb’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c SEERaBomb_init.c -o SEERaBomb_init.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c fillPYM.cpp -o fillPYM.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SEERaBomb.so RcppExports.o SEERaBomb_init.o fillPYM.o -L/opt/R/4.3.1/lib/R/lib -lR +... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘demography’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘SEERaBomb’ +* removing ‘/tmp/workdir/SEERaBomb/new/SEERaBomb.Rcheck/SEERaBomb’ + + +``` +### CRAN + +``` +* installing *source* package ‘SEERaBomb’ ... +** package ‘SEERaBomb’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c SEERaBomb_init.c -o SEERaBomb_init.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c fillPYM.cpp -o fillPYM.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SEERaBomb.so RcppExports.o SEERaBomb_init.o fillPYM.o -L/opt/R/4.3.1/lib/R/lib -lR +... +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘demography’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘SEERaBomb’ +* removing ‘/tmp/workdir/SEERaBomb/old/SEERaBomb.Rcheck/SEERaBomb’ + + +``` +# semicmprskcoxmsm + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/semicmprskcoxmsm +* Date/Publication: 2022-04-29 23:40:02 UTC +* Number of recursive dependencies: 70 + +Run `revdepcheck::cloud_details(, "semicmprskcoxmsm")` for more info + +
+ +## In both + +* checking whether package ‘semicmprskcoxmsm’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/semicmprskcoxmsm/new/semicmprskcoxmsm.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘semicmprskcoxmsm’ ... +** package ‘semicmprskcoxmsm’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘semicmprskcoxmsm’ +* removing ‘/tmp/workdir/semicmprskcoxmsm/new/semicmprskcoxmsm.Rcheck/semicmprskcoxmsm’ + + +``` +### CRAN + +``` +* installing *source* package ‘semicmprskcoxmsm’ ... +** package ‘semicmprskcoxmsm’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘semicmprskcoxmsm’ +* removing ‘/tmp/workdir/semicmprskcoxmsm/old/semicmprskcoxmsm.Rcheck/semicmprskcoxmsm’ + + +``` +# SensMap + +
+ +* Version: 0.7 +* GitHub: https://github.com/IbtihelRebhi/SensMap +* Source code: https://github.com/cran/SensMap +* Date/Publication: 2022-07-04 19:00:02 UTC +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "SensMap")` for more info + +
+ +## In both + +* checking whether package ‘SensMap’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/SensMap/new/SensMap.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘SensMap’ ... +** package ‘SensMap’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SensMap’ +* removing ‘/tmp/workdir/SensMap/new/SensMap.Rcheck/SensMap’ + + +``` +### CRAN + +``` +* installing *source* package ‘SensMap’ ... +** package ‘SensMap’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SensMap’ +* removing ‘/tmp/workdir/SensMap/old/SensMap.Rcheck/SensMap’ + + +``` +# Signac + +
+ +* Version: 1.13.0 +* GitHub: https://github.com/stuart-lab/signac +* Source code: https://github.com/cran/Signac +* Date/Publication: 2024-04-04 02:42:57 UTC +* Number of recursive dependencies: 249 + +Run `revdepcheck::cloud_details(, "Signac")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/Signac/new/Signac.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Signac/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘SeuratObject’ + +Package suggested but not available for checking: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/Signac/old/Signac.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘Signac/DESCRIPTION’ ... OK +... +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘SeuratObject’ + +Package suggested but not available for checking: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# SimplyAgree + +
+ +* Version: 0.2.0 +* GitHub: https://github.com/arcaldwell49/SimplyAgree +* Source code: https://github.com/cran/SimplyAgree +* Date/Publication: 2024-03-21 14:20:06 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "SimplyAgree")` for more info + +
+ +## In both + +* checking whether package ‘SimplyAgree’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘SimplyAgree’ ... +** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SimplyAgree’ +* removing ‘/tmp/workdir/SimplyAgree/new/SimplyAgree.Rcheck/SimplyAgree’ + + +``` +### CRAN + +``` +* installing *source* package ‘SimplyAgree’ ... +** package ‘SimplyAgree’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SimplyAgree’ +* removing ‘/tmp/workdir/SimplyAgree/old/SimplyAgree.Rcheck/SimplyAgree’ + + +``` +# sMSROC + +
+ +* Version: 0.1.2 +* GitHub: NA +* Source code: https://github.com/cran/sMSROC +* Date/Publication: 2023-12-07 15:50:02 UTC +* Number of recursive dependencies: 119 + +Run `revdepcheck::cloud_details(, "sMSROC")` for more info + +
+ +## In both + +* checking whether package ‘sMSROC’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/sMSROC/new/sMSROC.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘sMSROC’ ... +** package ‘sMSROC’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘sMSROC’ +* removing ‘/tmp/workdir/sMSROC/new/sMSROC.Rcheck/sMSROC’ + + +``` +### CRAN + +``` +* installing *source* package ‘sMSROC’ ... +** package ‘sMSROC’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘sMSROC’ +* removing ‘/tmp/workdir/sMSROC/old/sMSROC.Rcheck/sMSROC’ + + +``` +# SNPassoc + +
+ +* Version: 2.1-0 +* GitHub: https://github.com/isglobal-brge/SNPassoc +* Source code: https://github.com/cran/SNPassoc +* Date/Publication: 2022-12-14 20:20:02 UTC +* Number of recursive dependencies: 166 + +Run `revdepcheck::cloud_details(, "SNPassoc")` for more info + +
+ +## In both + +* checking whether package ‘SNPassoc’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/SNPassoc/new/SNPassoc.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘SNPassoc’ ... +** package ‘SNPassoc’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SNPassoc’ +* removing ‘/tmp/workdir/SNPassoc/new/SNPassoc.Rcheck/SNPassoc’ + + +``` +### CRAN + +``` +* installing *source* package ‘SNPassoc’ ... +** package ‘SNPassoc’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘SNPassoc’ +* removing ‘/tmp/workdir/SNPassoc/old/SNPassoc.Rcheck/SNPassoc’ + + +``` +# snplinkage + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/snplinkage +* Date/Publication: 2023-05-04 08:10:02 UTC +* Number of recursive dependencies: 146 + +Run `revdepcheck::cloud_details(, "snplinkage")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/snplinkage/new/snplinkage.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘snplinkage/DESCRIPTION’ ... OK +... +* this is package ‘snplinkage’ version ‘1.0.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘GWASTools’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/snplinkage/old/snplinkage.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘snplinkage/DESCRIPTION’ ... OK +... +* this is package ‘snplinkage’ version ‘1.0.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘GWASTools’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# SoupX + +
+ +* Version: 1.6.2 +* GitHub: https://github.com/constantAmateur/SoupX +* Source code: https://github.com/cran/SoupX +* Date/Publication: 2022-11-01 14:00:03 UTC +* Number of recursive dependencies: 200 + +Run `revdepcheck::cloud_details(, "SoupX")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/SoupX/new/SoupX.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SoupX/DESCRIPTION’ ... OK +... +* this is package ‘SoupX’ version ‘1.6.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/SoupX/old/SoupX.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SoupX/DESCRIPTION’ ... OK +... +* this is package ‘SoupX’ version ‘1.6.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘Seurat’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# SpaDES.core + +
+ +* Version: 2.0.5 +* GitHub: https://github.com/PredictiveEcology/SpaDES.core +* Source code: https://github.com/cran/SpaDES.core +* Date/Publication: 2024-04-25 17:20:02 UTC +* Number of recursive dependencies: 136 + +Run `revdepcheck::cloud_details(, "SpaDES.core")` for more info + +
+ +## In both + +* checking whether package ‘SpaDES.core’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/SpaDES.core/new/SpaDES.core.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘SpaDES.core’ ... +** package ‘SpaDES.core’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Creating a new generic function for ‘citation’ in package ‘SpaDES.core’ +Error in get(x, envir = ns, inherits = FALSE) : + object '.addingToMemoisedMsg' not found +Error: unable to load R code in package ‘SpaDES.core’ +Execution halted +ERROR: lazy loading failed for package ‘SpaDES.core’ +* removing ‘/tmp/workdir/SpaDES.core/new/SpaDES.core.Rcheck/SpaDES.core’ + + +``` +### CRAN + +``` +* installing *source* package ‘SpaDES.core’ ... +** package ‘SpaDES.core’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Creating a new generic function for ‘citation’ in package ‘SpaDES.core’ +Error in get(x, envir = ns, inherits = FALSE) : + object '.addingToMemoisedMsg' not found +Error: unable to load R code in package ‘SpaDES.core’ +Execution halted +ERROR: lazy loading failed for package ‘SpaDES.core’ +* removing ‘/tmp/workdir/SpaDES.core/old/SpaDES.core.Rcheck/SpaDES.core’ + + +``` +# sparsereg + +
+ +* Version: 1.2 +* GitHub: NA +* Source code: https://github.com/cran/sparsereg +* Date/Publication: 2016-03-10 23:32:18 +* Number of recursive dependencies: 49 + +Run `revdepcheck::cloud_details(, "sparsereg")` for more info + +
+ +## In both + +* checking whether package ‘sparsereg’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/sparsereg/new/sparsereg.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘sparsereg’ ... +** package ‘sparsereg’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makeinter.cpp -o makeinter.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makethreeinter.cpp -o makethreeinter.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c subgroup.cpp -o subgroup.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sparsereg.so RcppExports.o makeinter.o makethreeinter.o subgroup.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/sparsereg/new/sparsereg.Rcheck/00LOCK-sparsereg/00new/sparsereg/libs +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘sparsereg’ +* removing ‘/tmp/workdir/sparsereg/new/sparsereg.Rcheck/sparsereg’ + + +``` +### CRAN + +``` +* installing *source* package ‘sparsereg’ ... +** package ‘sparsereg’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makeinter.cpp -o makeinter.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c makethreeinter.cpp -o makethreeinter.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c subgroup.cpp -o subgroup.o +g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o sparsereg.so RcppExports.o makeinter.o makethreeinter.o subgroup.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/sparsereg/old/sparsereg.Rcheck/00LOCK-sparsereg/00new/sparsereg/libs +** R +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘sparsereg’ +* removing ‘/tmp/workdir/sparsereg/old/sparsereg.Rcheck/sparsereg’ + + +``` +# SPECK + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/SPECK +* Date/Publication: 2023-11-17 17:30:02 UTC +* Number of recursive dependencies: 161 + +Run `revdepcheck::cloud_details(, "SPECK")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/SPECK/new/SPECK.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SPECK/DESCRIPTION’ ... OK +... +Package required but not available: ‘Seurat’ + +Package required and available but unsuitable version: ‘Matrix’ + +Package suggested but not available for checking: ‘SeuratObject’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/SPECK/old/SPECK.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘SPECK/DESCRIPTION’ ... OK +... +Package required but not available: ‘Seurat’ + +Package required and available but unsuitable version: ‘Matrix’ + +Package suggested but not available for checking: ‘SeuratObject’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# spikeSlabGAM + +
+ +* Version: 1.1-19 +* GitHub: https://github.com/fabian-s/spikeSlabGAM +* Source code: https://github.com/cran/spikeSlabGAM +* Date/Publication: 2022-06-10 15:50:07 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "spikeSlabGAM")` for more info + +
+ +## In both + +* checking whether package ‘spikeSlabGAM’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/spikeSlabGAM/new/spikeSlabGAM.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘spikeSlabGAM’ ... +** package ‘spikeSlabGAM’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sampler.c -o sampler.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spikeSlabGAM_init.c -o spikeSlabGAM_init.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o spikeSlabGAM.so sampler.o spikeSlabGAM_init.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/spikeSlabGAM/new/spikeSlabGAM.Rcheck/00LOCK-spikeSlabGAM/00new/spikeSlabGAM/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘spikeSlabGAM’ +* removing ‘/tmp/workdir/spikeSlabGAM/new/spikeSlabGAM.Rcheck/spikeSlabGAM’ ``` ### CRAN ``` -* installing *source* package ‘EcoEnsemble’ ... -** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked +* installing *source* package ‘spikeSlabGAM’ ... +** package ‘spikeSlabGAM’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_namespace::model_ensemble_model; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model.o] Error 1 -ERROR: compilation failed for package ‘EcoEnsemble’ -* removing ‘/tmp/workdir/EcoEnsemble/old/EcoEnsemble.Rcheck/EcoEnsemble’ +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sampler.c -o sampler.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spikeSlabGAM_init.c -o spikeSlabGAM_init.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o spikeSlabGAM.so sampler.o spikeSlabGAM_init.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/spikeSlabGAM/old/spikeSlabGAM.Rcheck/00LOCK-spikeSlabGAM/00new/spikeSlabGAM/libs +** R +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘spikeSlabGAM’ +* removing ‘/tmp/workdir/spikeSlabGAM/old/spikeSlabGAM.Rcheck/spikeSlabGAM’ ``` -# geostan +# statsr
-* Version: 0.5.4 -* GitHub: https://github.com/ConnorDonegan/geostan -* Source code: https://github.com/cran/geostan -* Date/Publication: 2024-03-03 15:22:39 UTC -* Number of recursive dependencies: 108 +* Version: 0.3.0 +* GitHub: https://github.com/StatsWithR/statsr +* Source code: https://github.com/cran/statsr +* Date/Publication: 2021-01-22 20:40:03 UTC +* Number of recursive dependencies: 98 -Run `revdepcheck::cloud_details(, "geostan")` for more info +Run `revdepcheck::cloud_details(, "statsr")` for more info
## In both -* checking whether package ‘geostan’ can be installed ... ERROR +* checking whether package ‘statsr’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/geostan/new/geostan.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/statsr/new/statsr.Rcheck/00install.out’ for details. ``` ## Installation @@ -337,68 +9005,52 @@ Run `revdepcheck::cloud_details(, "geostan")` for more info ### Devel ``` -* installing *source* package ‘geostan’ ... -** package ‘geostan’ successfully unpacked and MD5 sums checked +* installing *source* package ‘statsr’ ... +** package ‘statsr’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_foundation_namespace::model_foundation; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_foundation.o] Error 1 -ERROR: compilation failed for package ‘geostan’ -* removing ‘/tmp/workdir/geostan/new/geostan.Rcheck/geostan’ +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘BayesFactor’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘statsr’ +* removing ‘/tmp/workdir/statsr/new/statsr.Rcheck/statsr’ ``` ### CRAN ``` -* installing *source* package ‘geostan’ ... -** package ‘geostan’ successfully unpacked and MD5 sums checked +* installing *source* package ‘statsr’ ... +** package ‘statsr’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_foundation_namespace::model_foundation; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_foundation.o] Error 1 -ERROR: compilation failed for package ‘geostan’ -* removing ‘/tmp/workdir/geostan/old/geostan.Rcheck/geostan’ +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘BayesFactor’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘statsr’ +* removing ‘/tmp/workdir/statsr/old/statsr.Rcheck/statsr’ ``` -# grandR +# streamDAG
-* Version: 0.2.5 -* GitHub: https://github.com/erhard-lab/grandR -* Source code: https://github.com/cran/grandR -* Date/Publication: 2024-02-15 15:30:02 UTC -* Number of recursive dependencies: 266 +* Version: 1.5 +* GitHub: NA +* Source code: https://github.com/cran/streamDAG +* Date/Publication: 2023-10-06 18:50:02 UTC +* Number of recursive dependencies: 133 -Run `revdepcheck::cloud_details(, "grandR")` for more info +Run `revdepcheck::cloud_details(, "streamDAG")` for more info
@@ -407,27 +9059,25 @@ Run `revdepcheck::cloud_details(, "grandR")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/grandR/new/grandR.Rcheck’ +* using log directory ‘/tmp/workdir/streamDAG/new/streamDAG.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 -* running under: Ubuntu 20.04.6 LTS + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘grandR/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘getting-started.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK +* checking for file ‘streamDAG/DESCRIPTION’ ... OK +* this is package ‘streamDAG’ version ‘1.5’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘asbio’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. * DONE -Status: 2 NOTEs +Status: 1 ERROR @@ -437,53 +9087,57 @@ Status: 2 NOTEs ### CRAN ``` -* using log directory ‘/tmp/workdir/grandR/old/grandR.Rcheck’ +* using log directory ‘/tmp/workdir/streamDAG/old/streamDAG.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 -* running under: Ubuntu 20.04.6 LTS + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘grandR/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘getting-started.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK +* checking for file ‘streamDAG/DESCRIPTION’ ... OK +* this is package ‘streamDAG’ version ‘1.5’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘asbio’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. * DONE -Status: 2 NOTEs +Status: 1 ERROR ``` -# multilevelcoda +# survHE
-* Version: 1.2.3 -* GitHub: https://github.com/florale/multilevelcoda -* Source code: https://github.com/cran/multilevelcoda -* Date/Publication: 2024-03-10 23:00:03 UTC -* Number of recursive dependencies: 159 +* Version: 2.0.1 +* GitHub: https://github.com/giabaio/survHE +* Source code: https://github.com/cran/survHE +* Date/Publication: 2023-03-19 22:10:02 UTC +* Number of recursive dependencies: 130 -Run `revdepcheck::cloud_details(, "multilevelcoda")` for more info +Run `revdepcheck::cloud_details(, "survHE")` for more info
## In both -* checking whether package ‘multilevelcoda’ can be installed ... ERROR +* checking whether package ‘survHE’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/multilevelcoda/new/multilevelcoda.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/survHE/new/survHE.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Packages suggested but not available for checking: + 'survHEinla', 'survHEhmc' ``` ## Installation @@ -491,59 +9145,63 @@ Run `revdepcheck::cloud_details(, "multilevelcoda")` for more info ### Devel ``` -* installing *source* package ‘multilevelcoda’ ... -** package ‘multilevelcoda’ successfully unpacked and MD5 sums checked +* installing *source* package ‘survHE’ ... +** package ‘survHE’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: object ‘launch_shinystan’ is not exported by 'namespace:brms' +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘multilevelcoda’ -* removing ‘/tmp/workdir/multilevelcoda/new/multilevelcoda.Rcheck/multilevelcoda’ +ERROR: lazy loading failed for package ‘survHE’ +* removing ‘/tmp/workdir/survHE/new/survHE.Rcheck/survHE’ ``` ### CRAN ``` -* installing *source* package ‘multilevelcoda’ ... -** package ‘multilevelcoda’ successfully unpacked and MD5 sums checked +* installing *source* package ‘survHE’ ... +** package ‘survHE’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error: object ‘launch_shinystan’ is not exported by 'namespace:brms' +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace Execution halted -ERROR: lazy loading failed for package ‘multilevelcoda’ -* removing ‘/tmp/workdir/multilevelcoda/old/multilevelcoda.Rcheck/multilevelcoda’ +ERROR: lazy loading failed for package ‘survHE’ +* removing ‘/tmp/workdir/survHE/old/survHE.Rcheck/survHE’ ``` -# multinma +# survidm
-* Version: 0.6.1 -* GitHub: https://github.com/dmphillippo/multinma -* Source code: https://github.com/cran/multinma -* Date/Publication: 2024-03-06 01:00:05 UTC -* Number of recursive dependencies: 151 +* Version: 1.3.2 +* GitHub: NA +* Source code: https://github.com/cran/survidm +* Date/Publication: 2021-06-24 23:20:02 UTC +* Number of recursive dependencies: 87 -Run `revdepcheck::cloud_details(, "multinma")` for more info +Run `revdepcheck::cloud_details(, "survidm")` for more info
## In both -* checking whether package ‘multinma’ can be installed ... ERROR +* checking whether package ‘survidm’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/multinma/new/multinma.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/survidm/new/survidm.Rcheck/00install.out’ for details. ``` ## Installation @@ -551,77 +9209,73 @@ Run `revdepcheck::cloud_details(, "multinma")` for more info ### Devel ``` -* installing *source* package ‘multinma’ ... -** package ‘multinma’ successfully unpacked and MD5 sums checked +* installing *source* package ‘survidm’ ... +** package ‘survidm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -In file included from stanExports_survival_mspline.cc:5: -stanExports_survival_mspline.h: In constructor ‘model_survival_mspline_namespace::model_survival_mspline::model_survival_mspline(stan::io::var_context&, unsigned int, std::ostream*)’: -stanExports_survival_mspline.h:2252:3: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without - 2252 | model_survival_mspline(stan::io::var_context& context__, unsigned int - | ^~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_mspline.o] Error 1 -ERROR: compilation failed for package ‘multinma’ -* removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’ +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c survidm_init.c -o survidm_init.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c survivalBIV.c -o survivalBIV.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o survidm.so survidm_init.o survivalBIV.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/survidm/new/survidm.Rcheck/00LOCK-survidm/00new/survidm/libs +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘survidm’ +* removing ‘/tmp/workdir/survidm/new/survidm.Rcheck/survidm’ ``` ### CRAN ``` -* installing *source* package ‘multinma’ ... -** package ‘multinma’ successfully unpacked and MD5 sums checked +* installing *source* package ‘survidm’ ... +** package ‘survidm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, -... -In file included from stanExports_survival_mspline.cc:5: -stanExports_survival_mspline.h: In constructor ‘model_survival_mspline_namespace::model_survival_mspline::model_survival_mspline(stan::io::var_context&, unsigned int, std::ostream*)’: -stanExports_survival_mspline.h:2252:3: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without - 2252 | model_survival_mspline(stan::io::var_context& context__, unsigned int - | ^~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_mspline.o] Error 1 -ERROR: compilation failed for package ‘multinma’ -* removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’ +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c survidm_init.c -o survidm_init.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c survivalBIV.c -o survivalBIV.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o survidm.so survidm_init.o survivalBIV.o -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/survidm/old/survidm.Rcheck/00LOCK-survidm/00new/survidm/libs +** R +** data +*** moving datasets to lazyload DB +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘survidm’ +* removing ‘/tmp/workdir/survidm/old/survidm.Rcheck/survidm’ ``` -# rmsb +# tempted
-* Version: 1.1-0 -* GitHub: NA -* Source code: https://github.com/cran/rmsb -* Date/Publication: 2024-03-12 15:50:02 UTC -* Number of recursive dependencies: 144 +* Version: 0.1.1 +* GitHub: https://github.com/pixushi/tempted +* Source code: https://github.com/cran/tempted +* Date/Publication: 2024-05-09 02:40:02 UTC +* Number of recursive dependencies: 37 -Run `revdepcheck::cloud_details(, "rmsb")` for more info +Run `revdepcheck::cloud_details(, "tempted")` for more info
## In both -* checking whether package ‘rmsb’ can be installed ... ERROR +* checking whether package ‘tempted’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/tempted/new/tempted.Rcheck/00install.out’ for details. ``` ## Installation @@ -629,51 +9283,61 @@ Run `revdepcheck::cloud_details(, "rmsb")` for more info ### Devel ``` -* installing *source* package ‘rmsb’ ... -** package ‘rmsb’ successfully unpacked and MD5 sums checked +* installing *source* package ‘tempted’ ... +** package ‘tempted’ successfully unpacked and MD5 sums checked ** using staged installation -Error in loadNamespace(x) : there is no package called ‘rstantools’ -Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: configuration failed for package ‘rmsb’ -* removing ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/rmsb’ +ERROR: lazy loading failed for package ‘tempted’ +* removing ‘/tmp/workdir/tempted/new/tempted.Rcheck/tempted’ ``` ### CRAN ``` -* installing *source* package ‘rmsb’ ... -** package ‘rmsb’ successfully unpacked and MD5 sums checked +* installing *source* package ‘tempted’ ... +** package ‘tempted’ successfully unpacked and MD5 sums checked ** using staged installation -Error in loadNamespace(x) : there is no package called ‘rstantools’ -Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required Execution halted -ERROR: configuration failed for package ‘rmsb’ -* removing ‘/tmp/workdir/rmsb/old/rmsb.Rcheck/rmsb’ +ERROR: lazy loading failed for package ‘tempted’ +* removing ‘/tmp/workdir/tempted/old/tempted.Rcheck/tempted’ ``` -# rstanarm +# tidydr
-* Version: 2.32.1 -* GitHub: https://github.com/stan-dev/rstanarm -* Source code: https://github.com/cran/rstanarm -* Date/Publication: 2024-01-18 23:00:03 UTC -* Number of recursive dependencies: 138 +* Version: 0.0.5 +* GitHub: https://github.com/YuLab-SMU/tidydr +* Source code: https://github.com/cran/tidydr +* Date/Publication: 2023-03-08 09:20:02 UTC +* Number of recursive dependencies: 71 -Run `revdepcheck::cloud_details(, "rstanarm")` for more info +Run `revdepcheck::cloud_details(, "tidydr")` for more info
-## In both +## Newly broken -* checking whether package ‘rstanarm’ can be installed ... ERROR +* checking whether package ‘tidydr’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/00install.out’ for details. ``` ## Installation @@ -681,144 +9345,108 @@ Run `revdepcheck::cloud_details(, "rstanarm")` for more info ### Devel ``` -* installing *source* package ‘rstanarm’ ... -** package ‘rstanarm’ successfully unpacked and MD5 sums checked +* installing *source* package ‘tidydr’ ... +** package ‘tidydr’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 -"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/lm.stan -Wrote C++ file "stan_files/lm.cc" - - -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/mvmer.o] Error 1 -rm stan_files/lm.cc stan_files/mvmer.cc -ERROR: compilation failed for package ‘rstanarm’ -* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’ +** R +** inst +** byte-compile and prepare package for lazy loading +Error in get(x, envir = ns, inherits = FALSE) : + object 'len0_null' not found +Error: unable to load R code in package ‘tidydr’ +Execution halted +ERROR: lazy loading failed for package ‘tidydr’ +* removing ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/tidydr’ ``` ### CRAN ``` -* installing *source* package ‘rstanarm’ ... -** package ‘rstanarm’ successfully unpacked and MD5 sums checked +* installing *source* package ‘tidydr’ ... +** package ‘tidydr’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 -"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/lm.stan -Wrote C++ file "stan_files/lm.cc" - - -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/mvmer.o] Error 1 -rm stan_files/lm.cc stan_files/mvmer.cc -ERROR: compilation failed for package ‘rstanarm’ -* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’ +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (tidydr) ``` -# Seurat +# tidyEdSurvey
-* Version: 5.0.3 -* GitHub: https://github.com/satijalab/seurat -* Source code: https://github.com/cran/Seurat -* Date/Publication: 2024-03-18 23:40:02 UTC -* Number of recursive dependencies: 264 +* Version: 0.1.3 +* GitHub: NA +* Source code: https://github.com/cran/tidyEdSurvey +* Date/Publication: 2024-05-14 20:20:03 UTC +* Number of recursive dependencies: 107 -Run `revdepcheck::cloud_details(, "Seurat")` for more info +Run `revdepcheck::cloud_details(, "tidyEdSurvey")` for more info
-## Error before installation +## In both + +* checking whether package ‘tidyEdSurvey’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/tidyEdSurvey/new/tidyEdSurvey.Rcheck/00install.out’ for details. + ``` + +## Installation ### Devel ``` -* using log directory ‘/tmp/workdir/Seurat/new/Seurat.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Seurat/DESCRIPTION’ ... OK -... -* checking for GNU extensions in Makefiles ... OK -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: 3 NOTEs - - - +* installing *source* package ‘tidyEdSurvey’ ... +** package ‘tidyEdSurvey’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘EdSurvey’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1.1 is required +Execution halted +ERROR: lazy loading failed for package ‘tidyEdSurvey’ +* removing ‘/tmp/workdir/tidyEdSurvey/new/tidyEdSurvey.Rcheck/tidyEdSurvey’ ``` ### CRAN ``` -* using log directory ‘/tmp/workdir/Seurat/old/Seurat.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘Seurat/DESCRIPTION’ ... OK -... -* checking for GNU extensions in Makefiles ... OK -* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK -* checking use of PKG_*FLAGS in Makefiles ... OK -* checking compiled code ... OK -* checking examples ... OK -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* DONE -Status: 3 NOTEs - - - +* installing *source* package ‘tidyEdSurvey’ ... +** package ‘tidyEdSurvey’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘EdSurvey’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1.1 is required +Execution halted +ERROR: lazy loading failed for package ‘tidyEdSurvey’ +* removing ‘/tmp/workdir/tidyEdSurvey/old/tidyEdSurvey.Rcheck/tidyEdSurvey’ ``` -# streamDAG +# tidyseurat
-* Version: 1.5 -* GitHub: NA -* Source code: https://github.com/cran/streamDAG -* Date/Publication: 2023-10-06 18:50:02 UTC -* Number of recursive dependencies: 133 +* Version: 0.8.0 +* GitHub: https://github.com/stemangiola/tidyseurat +* Source code: https://github.com/cran/tidyseurat +* Date/Publication: 2024-01-10 04:50:02 UTC +* Number of recursive dependencies: 206 -Run `revdepcheck::cloud_details(, "streamDAG")` for more info +Run `revdepcheck::cloud_details(, "tidyseurat")` for more info
@@ -827,20 +9455,22 @@ Run `revdepcheck::cloud_details(, "streamDAG")` for more info ### Devel ``` -* using log directory ‘/tmp/workdir/streamDAG/new/streamDAG.Rcheck’ +* using log directory ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 -* running under: Ubuntu 20.04.6 LTS + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘streamDAG/DESCRIPTION’ ... OK -* this is package ‘streamDAG’ version ‘1.5’ +* checking for file ‘tidyseurat/DESCRIPTION’ ... OK +... +* this is package ‘tidyseurat’ version ‘0.8.0’ +* package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘asbio’ +Packages required but not available: 'SeuratObject', 'Seurat' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -855,20 +9485,22 @@ Status: 1 ERROR ### CRAN ``` -* using log directory ‘/tmp/workdir/streamDAG/old/streamDAG.Rcheck’ +* using log directory ‘/tmp/workdir/tidyseurat/old/tidyseurat.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 -* running under: Ubuntu 20.04.6 LTS + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * using option ‘--no-manual’ -* checking for file ‘streamDAG/DESCRIPTION’ ... OK -* this is package ‘streamDAG’ version ‘1.5’ +* checking for file ‘tidyseurat/DESCRIPTION’ ... OK +... +* this is package ‘tidyseurat’ version ‘0.8.0’ +* package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... ERROR -Package required but not available: ‘asbio’ +Packages required but not available: 'SeuratObject', 'Seurat' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. @@ -880,26 +9512,26 @@ Status: 1 ERROR ``` -# treestats +# tidyvpc
-* Version: 1.0.5 -* GitHub: https://github.com/thijsjanzen/treestats -* Source code: https://github.com/cran/treestats -* Date/Publication: 2024-01-30 15:50:02 UTC -* Number of recursive dependencies: 232 +* Version: 1.5.1 +* GitHub: https://github.com/certara/tidyvpc +* Source code: https://github.com/cran/tidyvpc +* Date/Publication: 2024-01-18 13:10:02 UTC +* Number of recursive dependencies: 176 -Run `revdepcheck::cloud_details(, "treestats")` for more info +Run `revdepcheck::cloud_details(, "tidyvpc")` for more info
## In both -* checking whether package ‘treestats’ can be installed ... ERROR +* checking whether package ‘tidyvpc’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/treestats/new/treestats.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/tidyvpc/new/tidyvpc.Rcheck/00install.out’ for details. ``` ## Installation @@ -907,24 +9539,116 @@ Run `revdepcheck::cloud_details(, "treestats")` for more info ### Devel ``` -* installing *source* package ‘treestats’ ... -** package ‘treestats’ successfully unpacked and MD5 sums checked +* installing *source* package ‘tidyvpc’ ... +** package ‘tidyvpc’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -Error: C++20 standard requested but CXX20 is not defined -* removing ‘/tmp/workdir/treestats/new/treestats.Rcheck/treestats’ +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘tidyvpc’ +* removing ‘/tmp/workdir/tidyvpc/new/tidyvpc.Rcheck/tidyvpc’ ``` ### CRAN ``` -* installing *source* package ‘treestats’ ... -** package ‘treestats’ successfully unpacked and MD5 sums checked +* installing *source* package ‘tidyvpc’ ... +** package ‘tidyvpc’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -Error: C++20 standard requested but CXX20 is not defined -* removing ‘/tmp/workdir/treestats/old/treestats.Rcheck/treestats’ +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘tidyvpc’ +* removing ‘/tmp/workdir/tidyvpc/old/tidyvpc.Rcheck/tidyvpc’ + + +``` +# treefit + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/hayamizu-lab/treefit-r +* Source code: https://github.com/cran/treefit +* Date/Publication: 2022-01-18 07:50:02 UTC +* Number of recursive dependencies: 159 + +Run `revdepcheck::cloud_details(, "treefit")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/treefit/new/treefit.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘treefit/DESCRIPTION’ ... OK +... + + When sourcing ‘working-with-seurat.R’: +Error: there is no package called ‘Seurat’ +Execution halted + + ‘treefit.Rmd’ using ‘UTF-8’... OK + ‘working-with-seurat.Rmd’ using ‘UTF-8’... failed +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 WARNING, 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/treefit/old/treefit.Rcheck’ +* using R version 4.3.1 (2023-06-16) +* using platform: x86_64-pc-linux-gnu (64-bit) +* R was compiled by + gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 + GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 +* running under: Ubuntu 22.04.4 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘treefit/DESCRIPTION’ ... OK +... + + When sourcing ‘working-with-seurat.R’: +Error: there is no package called ‘Seurat’ +Execution halted + + ‘treefit.Rmd’ using ‘UTF-8’... OK + ‘working-with-seurat.Rmd’ using ‘UTF-8’... failed +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 WARNING, 1 NOTE + + + ``` @@ -980,26 +9704,26 @@ ERROR: configuration failed for package ‘TriDimRegression’ ``` -# triptych +# TSrepr
-* Version: 0.1.2 -* GitHub: https://github.com/aijordan/triptych -* Source code: https://github.com/cran/triptych -* Date/Publication: 2023-10-03 16:30:02 UTC -* Number of recursive dependencies: 64 +* Version: 1.1.0 +* GitHub: https://github.com/PetoLau/TSrepr +* Source code: https://github.com/cran/TSrepr +* Date/Publication: 2020-07-13 06:50:15 UTC +* Number of recursive dependencies: 72 -Run `revdepcheck::cloud_details(, "triptych")` for more info +Run `revdepcheck::cloud_details(, "TSrepr")` for more info
## In both -* checking whether package ‘triptych’ can be installed ... ERROR +* checking whether package ‘TSrepr’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/triptych/new/triptych.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/TSrepr/new/TSrepr.Rcheck/00install.out’ for details. ``` ## Installation @@ -1007,47 +9731,77 @@ Run `revdepcheck::cloud_details(, "triptych")` for more info ### Devel ``` -* installing *source* package ‘triptych’ ... -** package ‘triptych’ successfully unpacked and MD5 sums checked +* installing *source* package ‘TSrepr’ ... +** package ‘TSrepr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -Error: C++20 standard requested but CXX20 is not defined -* removing ‘/tmp/workdir/triptych/new/triptych.Rcheck/triptych’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c FeatureClippingTrending.cpp -o FeatureClippingTrending.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c helpers.cpp -o helpers.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c measures.cpp -o measures.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c normalizations.cpp -o normalizations.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘TSrepr’ +* removing ‘/tmp/workdir/TSrepr/new/TSrepr.Rcheck/TSrepr’ ``` ### CRAN ``` -* installing *source* package ‘triptych’ ... -** package ‘triptych’ successfully unpacked and MD5 sums checked +* installing *source* package ‘TSrepr’ ... +** package ‘TSrepr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -Error: C++20 standard requested but CXX20 is not defined -* removing ‘/tmp/workdir/triptych/old/triptych.Rcheck/triptych’ +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c FeatureClippingTrending.cpp -o FeatureClippingTrending.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c helpers.cpp -o helpers.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c measures.cpp -o measures.o +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c normalizations.cpp -o normalizations.o +... +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘TSrepr’ +* removing ‘/tmp/workdir/TSrepr/old/TSrepr.Rcheck/TSrepr’ ``` -# ubms +# twang
-* Version: 1.2.6 -* GitHub: https://github.com/kenkellner/ubms -* Source code: https://github.com/cran/ubms -* Date/Publication: 2023-09-11 18:50:02 UTC -* Number of recursive dependencies: 145 +* Version: 2.6 +* GitHub: NA +* Source code: https://github.com/cran/twang +* Date/Publication: 2023-12-06 00:30:02 UTC +* Number of recursive dependencies: 53 -Run `revdepcheck::cloud_details(, "ubms")` for more info +Run `revdepcheck::cloud_details(, "twang")` for more info
## In both -* checking whether package ‘ubms’ can be installed ... ERROR +* checking whether package ‘twang’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/ubms/new/ubms.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/twang/new/twang.Rcheck/00install.out’ for details. ``` ## Installation @@ -1055,54 +9809,50 @@ Run `revdepcheck::cloud_details(, "ubms")` for more info ### Devel ``` -* installing *source* package ‘ubms’ ... -** package ‘ubms’ successfully unpacked and MD5 sums checked +* installing *source* package ‘twang’ ... +** package ‘twang’ successfully unpacked and MD5 sums checked ** using staged installation -Registered S3 methods overwritten by 'RcppEigen': - method from - predict.fastLm RcppArmadillo - print.fastLm RcppArmadillo - summary.fastLm RcppArmadillo - print.summary.fastLm RcppArmadillo -Warning message: -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_colext_namespace::model_colext; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_colext.o] Error 1 -ERROR: compilation failed for package ‘ubms’ -* removing ‘/tmp/workdir/ubms/new/ubms.Rcheck/ubms’ +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ks.c -o ks.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o twang.so init.o ks.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/twang/new/twang.Rcheck/00LOCK-twang/00new/twang/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘twang’ +* removing ‘/tmp/workdir/twang/new/twang.Rcheck/twang’ ``` ### CRAN ``` -* installing *source* package ‘ubms’ ... -** package ‘ubms’ successfully unpacked and MD5 sums checked +* installing *source* package ‘twang’ ... +** package ‘twang’ successfully unpacked and MD5 sums checked ** using staged installation -Registered S3 methods overwritten by 'RcppEigen': - method from - predict.fastLm RcppArmadillo - print.fastLm RcppArmadillo - summary.fastLm RcppArmadillo - print.summary.fastLm RcppArmadillo -Warning message: -... -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_colext_namespace::model_colext; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:34: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] - 654 | return internal::first_aligned::alignment),Derived>(m); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_colext.o] Error 1 -ERROR: compilation failed for package ‘ubms’ -* removing ‘/tmp/workdir/ubms/old/ubms.Rcheck/ubms’ +** libs +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o +gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ks.c -o ks.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o twang.so init.o ks.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/twang/old/twang.Rcheck/00LOCK-twang/00new/twang/libs +** R +** data +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘twang’ +* removing ‘/tmp/workdir/twang/old/twang.Rcheck/twang’ ``` @@ -1137,7 +9887,7 @@ Run `revdepcheck::cloud_details(, "valse")` for more info ** package ‘valse’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -using C compiler: ‘gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o @@ -1149,7 +9899,7 @@ gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for ‘valse’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/tmp/workdir/valse/new/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so': - /tmp/workdir/valse/new/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so: undefined symbol: gsl_vector_free + /tmp/workdir/valse/new/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so: undefined symbol: gsl_permutation_free Error: loading failed Execution halted ERROR: loading failed @@ -1164,7 +9914,7 @@ ERROR: loading failed ** package ‘valse’ successfully unpacked and MD5 sums checked ** using staged installation ** libs -using C compiler: ‘gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ +using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o @@ -1176,11 +9926,147 @@ gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for ‘valse’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/tmp/workdir/valse/old/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so': - /tmp/workdir/valse/old/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so: undefined symbol: gsl_vector_free + /tmp/workdir/valse/old/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so: undefined symbol: gsl_permutation_free Error: loading failed Execution halted ERROR: loading failed * removing ‘/tmp/workdir/valse/old/valse.Rcheck/valse’ +``` +# vdg + +
+ +* Version: 1.2.3 +* GitHub: NA +* Source code: https://github.com/cran/vdg +* Date/Publication: 2024-04-23 13:00:02 UTC +* Number of recursive dependencies: 45 + +Run `revdepcheck::cloud_details(, "vdg")` for more info + +
+ +## In both + +* checking whether package ‘vdg’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/vdg/new/vdg.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘vdg’ ... +** package ‘vdg’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gfortran -fpic -g -O2 -c FDS.f -o FDS.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o vdg.so FDS.o -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/vdg/new/vdg.Rcheck/00LOCK-vdg/00new/vdg/libs +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘vdg’ +* removing ‘/tmp/workdir/vdg/new/vdg.Rcheck/vdg’ + + +``` +### CRAN + +``` +* installing *source* package ‘vdg’ ... +** package ‘vdg’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +gfortran -fpic -g -O2 -c FDS.f -o FDS.o +gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o vdg.so FDS.o -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR +installing to /tmp/workdir/vdg/old/vdg.Rcheck/00LOCK-vdg/00new/vdg/libs +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Execution halted +ERROR: lazy loading failed for package ‘vdg’ +* removing ‘/tmp/workdir/vdg/old/vdg.Rcheck/vdg’ + + +``` +# WRTDStidal + +
+ +* Version: 1.1.4 +* GitHub: https://github.com/fawda123/WRTDStidal +* Source code: https://github.com/cran/WRTDStidal +* Date/Publication: 2023-10-20 09:00:11 UTC +* Number of recursive dependencies: 140 + +Run `revdepcheck::cloud_details(, "WRTDStidal")` for more info + +
+ +## In both + +* checking whether package ‘WRTDStidal’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/WRTDStidal/new/WRTDStidal.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘WRTDStidal’ ... +** package ‘WRTDStidal’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘WRTDStidal’ +* removing ‘/tmp/workdir/WRTDStidal/new/WRTDStidal.Rcheck/WRTDStidal’ + + +``` +### CRAN + +``` +* installing *source* package ‘WRTDStidal’ ... +** package ‘WRTDStidal’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required +Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace +Execution halted +ERROR: lazy loading failed for package ‘WRTDStidal’ +* removing ‘/tmp/workdir/WRTDStidal/old/WRTDStidal.Rcheck/WRTDStidal’ + + ``` diff --git a/revdep/problems.md b/revdep/problems.md index 8151dae476..1280d2fbbb 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,14 +1,2365 @@ +# asmbPLS + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/asmbPLS +* Date/Publication: 2023-04-17 09:50:05 UTC +* Number of recursive dependencies: 100 + +Run `revdepcheck::cloud_details(, "asmbPLS")` for more info + +
+ +## Newly broken + +* checking whether package ‘asmbPLS’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘asmbPLS’ + See ‘/tmp/workdir/asmbPLS/new/asmbPLS.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 19.7Mb + sub-directories of 1Mb or more: + data 2.1Mb + libs 16.5Mb + ``` + +# bdl + +
+ +* Version: 1.0.5 +* GitHub: https://github.com/statisticspoland/R_Package_to_API_BDL +* Source code: https://github.com/cran/bdl +* Date/Publication: 2023-02-24 15:00:02 UTC +* Number of recursive dependencies: 144 + +Run `revdepcheck::cloud_details(, "bdl")` for more info + +
+ +## Newly broken + +* checking whether package ‘bdl’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘bdl’ + See ‘/tmp/workdir/bdl/new/bdl.Rcheck/00install.out’ for details. + ``` + +# bdscale + +
+ +* Version: 2.0.0 +* GitHub: https://github.com/dvmlls/bdscale +* Source code: https://github.com/cran/bdscale +* Date/Publication: 2016-03-17 13:27:37 +* Number of recursive dependencies: 63 + +Run `revdepcheck::cloud_details(, "bdscale")` for more info + +
+ +## Newly broken + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘bdscale.Rmd’ + ... + > options <- as.Date(c("2014-08-15", "2014-09-19")) + + > plot + geom_vline(xintercept = as.numeric(options), + + size = 2, alpha = 0.25) + ggtitle("calendar dates, option expiry") + Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0. + ℹ Please use `linewidth` instead. + + When sourcing ‘bdscale.R’: + Error: `transform_date()` works with objects of class only + Execution halted + + ‘bdscale.Rmd’... failed + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘bdscale.Rmd’ using rmarkdown + ``` + +# biclustermd + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/jreisner/biclustermd +* Source code: https://github.com/cran/biclustermd +* Date/Publication: 2021-06-17 15:10:06 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "biclustermd")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(biclustermd) + Loading required package: ggplot2 + Loading required package: tidyr + + Attaching package: 'tidyr' + + ... + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 67 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-autoplot_biclustermd.R:6:3'): autoplot_biclustermd() correctly plots cluster lines ── + ap$data[[3]]$xintercept[-1] not equal to cumsum(colSums(sbc$P)) + 0.5. + Classes differ: 'mapped_discrete'/'numeric' is not 'numeric' + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 67 ] + Error: Test failures + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘nycflights13’ + All declared Imports should be used. + ``` + +# brolgar + +
+ +* Version: 1.0.1 +* GitHub: https://github.com/njtierney/brolgar +* Source code: https://github.com/cran/brolgar +* Date/Publication: 2024-05-10 14:50:34 UTC +* Number of recursive dependencies: 101 + +Run `revdepcheck::cloud_details(, "brolgar")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘brolgar-Ex.R’ failed + The error most likely occurred in: + + > ### Name: facet_sample + > ### Title: Facet data into groups to facilitate exploration + > ### Aliases: facet_sample + > + > ### ** Examples + > + > library(ggplot2) + > ggplot(heights, + + aes(x = year, + + y = height_cm, + + group = country)) + + + geom_line() + + + facet_sample() + Error in if (params$as.table) { : argument is of length zero + Calls: ... -> setup -> -> compute_layout + Execution halted + ``` + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘getting-started.Rmd’ + ... + > set.seed(2019 - 7 - 23 - 1936) + + > library(ggplot2) + + > ggplot(wages, aes(x = xp, y = ln_wages, group = id)) + + + geom_line() + facet_strata() + + ... + Error: argument is of length zero + Execution halted + + ‘exploratory-modelling.Rmd’ using ‘UTF-8’... OK + ‘finding-features.Rmd’ using ‘UTF-8’... OK + ‘getting-started.Rmd’ using ‘UTF-8’... failed + ‘id-interesting-obs.Rmd’ using ‘UTF-8’... OK + ‘longitudinal-data-structures.Rmd’ using ‘UTF-8’... OK + ‘mixed-effects-models.Rmd’ using ‘UTF-8’... failed + ‘visualisation-gallery.Rmd’ using ‘UTF-8’... failed + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘exploratory-modelling.Rmd’ using rmarkdown + ``` + +# bSi + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/bSi +* Date/Publication: 2024-01-24 15:52:57 UTC +* Number of recursive dependencies: 99 + +Run `revdepcheck::cloud_details(, "bSi")` for more info + +
+ +## Newly broken + +* checking whether package ‘bSi’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘bSi’ + See ‘/tmp/workdir/bSi/new/bSi.Rcheck/00install.out’ for details. + ``` + +# CausalImpact + +
+ +* Version: 1.3.0 +* GitHub: NA +* Source code: https://github.com/cran/CausalImpact +* Date/Publication: 2022-11-09 08:40:40 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "CausalImpact")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘CausalImpact_import_test.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # Copyright 2014-2022 Google Inc. All rights reserved. + > # + > # Licensed under the Apache License, Version 2.0 (the "License"); + > # you may not use this file except in compliance with the License. + > # You may obtain a copy of the License at + > # + ... + 20. └─base::lapply(df[aesthetics], self$transform) + 21. └─ggplot2 (local) FUN(X[[i]], ...) + 22. └─ggplot2 (local) transform(..., self = self) + 23. └─transformation$transform(x) + 24. └─cli::cli_abort("{.fun transform_date} works with objects of class {.cls Date} only") + 25. └─rlang::abort(...) + + [ FAIL 2 | WARN 1 | SKIP 0 | PASS 739 ] + Error: Test failures + Execution halted + ``` + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘CausalImpact.Rmd’ + ... + + > impact <- CausalImpact(data, pre.period, post.period) + + > q <- plot(impact) + theme_bw(base_size = 11) + + > suppressWarnings(plot(q)) + + When sourcing ‘CausalImpact.R’: + Error: `transform_date()` works with objects of class only + Execution halted + + ‘CausalImpact.Rmd’ using ‘UTF-8’... failed + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘CausalImpact.Rmd’ using rmarkdown + ``` + +# ClusROC + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/toduckhanh/ClusROC +* Source code: https://github.com/cran/ClusROC +* Date/Publication: 2022-11-17 15:00:02 UTC +* Number of recursive dependencies: 107 + +Run `revdepcheck::cloud_details(, "ClusROC")` for more info + +
+ +## Newly broken + +* checking whether package ‘ClusROC’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘ClusROC’ + See ‘/tmp/workdir/ClusROC/new/ClusROC.Rcheck/00install.out’ for details. + ``` + +# clustEff + +
+ +* Version: 0.3.1 +* GitHub: NA +* Source code: https://github.com/cran/clustEff +* Date/Publication: 2024-01-23 08:52:55 UTC +* Number of recursive dependencies: 136 + +Run `revdepcheck::cloud_details(, "clustEff")` for more info + +
+ +## Newly broken + +* checking whether package ‘clustEff’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘clustEff’ + See ‘/tmp/workdir/clustEff/new/clustEff.Rcheck/00install.out’ for details. + ``` + +# CLVTools + +
+ +* Version: 0.10.0 +* GitHub: https://github.com/bachmannpatrick/CLVTools +* Source code: https://github.com/cran/CLVTools +* Date/Publication: 2023-10-23 20:10:02 UTC +* Number of recursive dependencies: 85 + +Run `revdepcheck::cloud_details(, "CLVTools")` for more info + +
+ +## Newly broken + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘CLVTools.Rmd’ + ... + 248: 39.95483 2.336902 + 249: 34.28958 38.969738 + 250: 47.35500 7.284870 + + > plot(clv.apparel) + Plotting from 2005-01-03 until 2006-07-16. + + When sourcing ‘CLVTools.R’: + Error: `transform_date()` works with objects of class only + Execution halted + + ‘CLVTools.Rmd’ using ‘UTF-8’... failed + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘CLVTools.Rmd’ using rmarkdown + + Quitting from lines 270-272 [plot-actual] (CLVTools.Rmd) + Error: processing vignette 'CLVTools.Rmd' failed with diagnostics: + `transform_date()` works with objects of class only + --- failed re-building ‘CLVTools.Rmd’ + + SUMMARY: processing the following file failed: + ‘CLVTools.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 17.4Mb + sub-directories of 1Mb or more: + libs 15.5Mb + ``` + +# coda4microbiome + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/malucalle/coda4microbiome +* Source code: https://github.com/cran/coda4microbiome +* Date/Publication: 2024-02-21 08:30:06 UTC +* Number of recursive dependencies: 136 + +Run `revdepcheck::cloud_details(, "coda4microbiome")` for more info + +
+ +## Newly broken + +* checking whether package ‘coda4microbiome’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘coda4microbiome’ + See ‘/tmp/workdir/coda4microbiome/new/coda4microbiome.Rcheck/00install.out’ for details. + ``` + +# CompAREdesign + +
+ +* Version: 2.3.1 +* GitHub: NA +* Source code: https://github.com/cran/CompAREdesign +* Date/Publication: 2024-02-15 13:00:02 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "CompAREdesign")` for more info + +
+ +## Newly broken + +* checking whether package ‘CompAREdesign’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘CompAREdesign’ + See ‘/tmp/workdir/CompAREdesign/new/CompAREdesign.Rcheck/00install.out’ for details. + ``` + +# covidcast + +
+ +* Version: 0.5.2 +* GitHub: https://github.com/cmu-delphi/covidcast +* Source code: https://github.com/cran/covidcast +* Date/Publication: 2023-07-12 23:40:06 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "covidcast")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(covidcast) + We encourage COVIDcast API users to register on our mailing list: + https://lists.andrew.cmu.edu/mailman/listinfo/delphi-covidcast-api + We'll send announcements about new data sources, package updates, + server maintenance, and new features. + > + ... + • plot/default-county-choropleth.svg + • plot/default-hrr-choropleth-with-include.svg + • plot/default-msa-choropleth-with-include.svg + • plot/default-state-choropleth-with-include.svg + • plot/default-state-choropleth-with-range.svg + • plot/state-choropleth-with-no-metadata.svg + • plot/state-line-graph-with-range.svg + • plot/state-line-graph-with-stderrs.svg + Error: Test failures + Execution halted + ``` + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘plotting-signals.Rmd’ + ... + > plot(inum, choro_col = colors, choro_params = list(breaks = breaks), + + title = "New COVID cases (7-day trailing average) on 2020-07-14") + + When sourcing ‘plotting-signals.R’: + Error: Problem while setting up geom aesthetics. + ℹ Error occurred in the 5th layer. + Caused by error in `check_aesthetics()`: + ! Aesthetics must be either length 1 or the same as the data (3078). + ✖ Fix the following mappings: `fill`. + Execution halted + + ‘correlation-utils.Rmd’ using ‘UTF-8’... OK + ‘covidcast.Rmd’ using ‘UTF-8’... OK + ‘external-data.Rmd’ using ‘UTF-8’... OK + ‘multi-signals.Rmd’ using ‘UTF-8’... OK + ‘plotting-signals.Rmd’ using ‘UTF-8’... failed + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘correlation-utils.Rmd’ using rmarkdown + --- finished re-building ‘correlation-utils.Rmd’ + + --- re-building ‘covidcast.Rmd’ using rmarkdown + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 20 marked UTF-8 strings + ``` + +# Coxmos + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/BiostatOmics/Coxmos +* Source code: https://github.com/cran/Coxmos +* Date/Publication: 2024-03-25 20:32:38 UTC +* Number of recursive dependencies: 204 + +Run `revdepcheck::cloud_details(, "Coxmos")` for more info + +
+ +## Newly broken + +* checking Rd files ... WARNING + ``` + prepare_Rd: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘survminer’ + ``` + +## In both + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘Coxmos-pipeline.Rmd’ + ... + Warning in data("X_proteomic") : data set ‘X_proteomic’ not found + + > data("Y_proteomic") + Warning in data("Y_proteomic") : data set ‘Y_proteomic’ not found + + > X <- X_proteomic + + When sourcing ‘Coxmos-pipeline.R’: + Error: object 'X_proteomic' not found + Execution halted + + ‘Coxmos-MO-pipeline.Rmd’ using ‘UTF-8’... OK + ‘Coxmos-pipeline.Rmd’ using ‘UTF-8’... failed + ``` + +* checking installed package size ... NOTE + ``` + installed size is 6.5Mb + sub-directories of 1Mb or more: + data 2.1Mb + doc 2.9Mb + ``` + +# csa + +
+ +* Version: 0.7.1 +* GitHub: https://github.com/imarkonis/csa +* Source code: https://github.com/cran/csa +* Date/Publication: 2023-10-24 13:40:11 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "csa")` for more info + +
+ +## Newly broken + +* checking whether package ‘csa’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘csa’ + See ‘/tmp/workdir/csa/new/csa.Rcheck/00install.out’ for details. + ``` + +# deeptime + +
+ +* Version: 1.1.1 +* GitHub: https://github.com/willgearty/deeptime +* Source code: https://github.com/cran/deeptime +* Date/Publication: 2024-03-08 17:10:10 UTC +* Number of recursive dependencies: 181 + +Run `revdepcheck::cloud_details(, "deeptime")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘deeptime-Ex.R’ failed + The error most likely occurred in: + + > ### Name: facet_wrap_color + > ### Title: Wrap a 1d ribbon of panels into 2d with colored strips + > ### Aliases: facet_wrap_color FacetWrapColor + > ### Keywords: datasets + > + > ### ** Examples + > + ... + 6. │ └─ggplot2 (local) setup(..., self = self) + 7. │ └─self$facet$compute_layout(data, self$facet_params) + 8. │ └─ggplot2 (local) compute_layout(..., self = self) + 9. │ └─ggplot2:::wrap_layout(id, dims, params$dir) + 10. │ └─ggplot2:::data_frame0(...) + 11. │ └─vctrs::data_frame(..., .name_repair = "minimal") + 12. └─vctrs:::stop_recycle_incompatible_size(...) + 13. └─vctrs:::stop_vctrs(...) + 14. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(deeptime) + > + > test_check("deeptime") + Scale for y is already present. + Adding another scale for y, which will replace the existing scale. + Scale for y is already present. + ... + • gggeo_scale/gggeo-scale-top-new.svg + • gggeo_scale/gggeo-scale-top-old.svg + • points_range/geom-points-range-aes-new.svg + • points_range/geom-points-range-aes-old.svg + • points_range/geom-points-range-bg-new.svg + • points_range/geom-points-range-bg-old.svg + • points_range/geom-points-range-h-new.svg + • points_range/geom-points-range-h-old.svg + Error: Test failures + Execution halted + ``` + +# DEGRE + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/DEGRE +* Date/Publication: 2022-11-02 09:32:57 UTC +* Number of recursive dependencies: 89 + +Run `revdepcheck::cloud_details(, "DEGRE")` for more info + +
+ +## Newly broken + +* checking whether package ‘DEGRE’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘DEGRE’ + See ‘/tmp/workdir/DEGRE/new/DEGRE.Rcheck/00install.out’ for details. + ``` + +# did + +
+ +* Version: 2.1.2 +* GitHub: https://github.com/bcallaway11/did +* Source code: https://github.com/cran/did +* Date/Publication: 2022-07-20 16:00:05 UTC +* Number of recursive dependencies: 125 + +Run `revdepcheck::cloud_details(, "did")` for more info + +
+ +## Newly broken + +* checking whether package ‘did’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘did’ + See ‘/tmp/workdir/did/new/did.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking running R code from vignettes ... WARNING + ``` + Errors in running code in vignettes: + when running code in ‘TWFE.Rmd’ + ... + + > knitr::opts_chunk$set(collapse = TRUE, comment = "#>", + + echo = TRUE, eval = FALSE) + + > library(tidyverse) + + When sourcing ‘TWFE.R’: + ... + + When sourcing ‘pre-testing.R’: + Error: cannot open the connection + Execution halted + + ‘TWFE.Rmd’ using ‘UTF-8’... failed + ‘did-basics.Rmd’ using ‘UTF-8’... OK + ‘extensions.Rmd’ using ‘UTF-8’... failed + ‘multi-period-did.Rmd’ using ‘UTF-8’... OK + ‘pre-testing.Rmd’ using ‘UTF-8’... failed + ``` + +# EpiCurve + +
+ +* Version: 2.4-2 +* GitHub: https://github.com/IamKDO/EpiCurve +* Source code: https://github.com/cran/EpiCurve +* Date/Publication: 2021-07-14 16:20:05 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "EpiCurve")` for more info + +
+ +## Newly broken + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘EpiCurve.Rmd’ + ... + |2016-11-06 | 6.60| 116| + |2016-11-07 | 7.68| 141| + |2016-11-07 | 10.08| 126| + + > EpiCurve(DF, date = "UTS", period = "day", colors = "#9900ef", + + xlabel = sprintf("From %s to %s", min(DF$UTS), max(DF$UTS))) + + When sourcing ‘EpiCurve.R’: + Error: `transform_date()` works with objects of class only + Execution halted + + ‘EpiCurve.Rmd’ using ‘UTF-8’... failed + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘EpiCurve.Rmd’ using rmarkdown + + Quitting from lines 103-106 [unnamed-chunk-3] (EpiCurve.Rmd) + Error: processing vignette 'EpiCurve.Rmd' failed with diagnostics: + `transform_date()` works with objects of class only + --- failed re-building ‘EpiCurve.Rmd’ + + SUMMARY: processing the following file failed: + ‘EpiCurve.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘tibble’ + All declared Imports should be used. + ``` + +# epiR + +
+ +* Version: 2.0.74 +* GitHub: NA +* Source code: https://github.com/cran/epiR +* Date/Publication: 2024-04-27 12:30:02 UTC +* Number of recursive dependencies: 125 + +Run `revdepcheck::cloud_details(, "epiR")` for more info + +
+ +## Newly broken + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘epiR_descriptive.Rmd’ + ... + + geom_histogram(binwidth = 7, colour = "gray", fill = "dark blue", + + li .... [TRUNCATED] + + > ggplot(data = dat.df, aes(x = as.Date(odate))) + theme_bw() + + + geom_histogram(binwidth = 7, colour = "gray", fill = "dark blue", + + li .... [TRUNCATED] + + When sourcing ‘epiR_descriptive.R’: + Error: `transform_date()` works with objects of class only + Execution halted + + ‘epiR_descriptive.Rmd’... failed + ‘epiR_measures_of_association.Rmd’... OK + ‘epiR_sample_size.Rmd’... OK + ‘epiR_surveillance.Rmd’... OK + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘epiR_descriptive.Rmd’ using rmarkdown + ``` + +# FuncNN + +
+ +* Version: 1.0 +* GitHub: https://github.com/b-thi/FuncNN +* Source code: https://github.com/cran/FuncNN +* Date/Publication: 2020-09-15 09:40:15 UTC +* Number of recursive dependencies: 170 + +Run `revdepcheck::cloud_details(, "FuncNN")` for more info + +
+ +## Newly broken + +* checking whether package ‘FuncNN’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘FuncNN’ + See ‘/tmp/workdir/FuncNN/new/FuncNN.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘foreach’ + All declared Imports should be used. + ``` + +# geostan + +
+ +* Version: 0.6.1 +* GitHub: https://github.com/ConnorDonegan/geostan +* Source code: https://github.com/cran/geostan +* Date/Publication: 2024-05-10 22:23:01 UTC +* Number of recursive dependencies: 108 + +Run `revdepcheck::cloud_details(, "geostan")` for more info + +
+ +## Newly broken + +* checking whether package ‘geostan’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/geostan/new/geostan.Rcheck/00install.out’ for details. + ``` + +## Newly fixed + +* checking installed package size ... NOTE + ``` + installed size is 129.8Mb + sub-directories of 1Mb or more: + libs 127.6Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘RcppParallel’ ‘rstantools’ + All declared Imports should be used. + ``` + +* checking for GNU extensions in Makefiles ... NOTE + ``` + GNU make is a SystemRequirements. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘geostan’ ... +** package ‘geostan’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +stanExports_foundation.cc:32:1: fatal error: error writing to /tmp/cccy6wQ6.s: Cannot allocate memory + 32 | } + | ^ +compilation terminated. +make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_foundation.o] Error 1 +ERROR: compilation failed for package ‘geostan’ +* removing ‘/tmp/workdir/geostan/new/geostan.Rcheck/geostan’ + + +``` +### CRAN + +``` +* installing *source* package ‘geostan’ ... +** package ‘geostan’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +** help +*** installing help indices +*** copying figures +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** checking absolute paths in shared objects and dynamic libraries +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (geostan) + + +``` +# ggedit + +
+ +* Version: 0.4.1 +* GitHub: https://github.com/yonicd/ggedit +* Source code: https://github.com/cran/ggedit +* Date/Publication: 2024-03-04 14:40:02 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "ggedit")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggedit-Ex.R’ failed + The error most likely occurred in: + + > ### Name: print.ggedit + > ### Title: Print ggedit objects + > ### Aliases: print.ggedit + > + > ### ** Examples + > + > p <- as.gglist(pList[1:2]) + ... + 8. │ └─ggplot2 (local) setup(..., self = self) + 9. │ └─self$facet$compute_layout(data, self$facet_params) + 10. │ └─ggplot2 (local) compute_layout(..., self = self) + 11. │ └─ggplot2:::wrap_layout(id, dims, params$dir) + 12. │ └─ggplot2:::data_frame0(...) + 13. │ └─vctrs::data_frame(..., .name_repair = "minimal") + 14. └─vctrs:::stop_recycle_incompatible_size(...) + 15. └─vctrs:::stop_vctrs(...) + 16. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +# ggfixest + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/grantmcdermott/ggfixest +* Source code: https://github.com/cran/ggfixest +* Date/Publication: 2023-12-14 08:00:06 UTC +* Number of recursive dependencies: 78 + +Run `revdepcheck::cloud_details(, "ggfixest")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘tinytest.R’ + Running the tests in ‘tests/tinytest.R’ failed. + Complete output: + > ## Throttle CPU threads if R CMD check (for CRAN) + > + > if (any(grepl("_R_CHECK", names(Sys.getenv()), fixed = TRUE))) { + + # fixest + + if (requireNamespace("fixest", quietly = TRUE)) { + + library(fixest) + + setFixest_nthreads(1) + ... + ----- FAILED[]: test_ggcoefplot.R<66--66> + call| expect_snapshot_plot(p_did_iid_summ, label = "ggcoefplot_did_iid") + diff| 7580 + info| Diff plot saved to: _tinysnapshot_review/ggcoefplot_did_iid.png + ----- FAILED[]: test_ggcoefplot.R<67--67> + call| expect_snapshot_plot(p_did_iid, label = "ggcoefplot_did_iid") + diff| 7580 + info| Diff plot saved to: _tinysnapshot_review/ggcoefplot_did_iid.png + Error: 12 out of 101 tests failed + Execution halted + ``` + +## In both + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘ggiplot.Rmd’ + ... + > iplot(list(TWFE = est_twfe_grp, `Sun & Abraham (2020)` = est_sa20_grp), + + ref.line = -1, main = "Staggered treatment: Split mutli-sample") + The degrees of freedom for the t distribution could not be deduced. Using a Normal distribution instead. + Note that you can provide the argument `df.t` directly. + + When sourcing ‘ggiplot.R’: + Error: in iplot(list(TWFE = est_twfe_grp, `Sun & Abraham (2...: + The 1st element of 'object' raises and error: + Error in nb * sd : non-numeric argument to binary operator + Execution halted + + ‘ggiplot.Rmd’ using ‘UTF-8’... failed + ``` + +# ggfortify + +
+ +* Version: 0.4.17 +* GitHub: https://github.com/sinhrks/ggfortify +* Source code: https://github.com/cran/ggfortify +* Date/Publication: 2024-04-17 04:30:04 UTC +* Number of recursive dependencies: 125 + +Run `revdepcheck::cloud_details(, "ggfortify")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘basics.Rmd’ using knitr + + Attaching package: 'zoo' + + The following objects are masked from 'package:base': + + as.Date, as.Date.numeric + ``` + # ggh4x
-* Version: 0.2.8 -* GitHub: https://github.com/teunbrand/ggh4x -* Source code: https://github.com/cran/ggh4x -* Date/Publication: 2024-01-23 21:00:02 UTC -* Number of recursive dependencies: 77 +* Version: 0.2.8 +* GitHub: https://github.com/teunbrand/ggh4x +* Source code: https://github.com/cran/ggh4x +* Date/Publication: 2024-01-23 21:00:02 UTC +* Number of recursive dependencies: 77 + +Run `revdepcheck::cloud_details(, "ggh4x")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘ggh4x-Ex.R’ failed + The error most likely occurred in: + + > ### Name: facet_nested_wrap + > ### Title: Ribbon of panels with nested strips. + > ### Aliases: facet_nested_wrap + > + > ### ** Examples + > + > # A standard plot + ... + 6. │ └─ggplot2 (local) setup(..., self = self) + 7. │ └─self$facet$compute_layout(data, self$facet_params) + 8. │ └─ggplot2 (local) compute_layout(..., self = self) + 9. │ └─ggplot2:::wrap_layout(id, dims, params$dir) + 10. │ └─ggplot2:::data_frame0(...) + 11. │ └─vctrs::data_frame(..., .name_repair = "minimal") + 12. └─vctrs:::stop_recycle_incompatible_size(...) + 13. └─vctrs:::stop_vctrs(...) + 14. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(ggh4x) + Loading required package: ggplot2 + > + > test_check("ggh4x") + [ FAIL 8 | WARN 0 | SKIP 18 | PASS 723 ] + + ... + 11. │ └─ggplot2:::wrap_layout(id, dims, params$dir) + 12. │ └─ggplot2:::data_frame0(...) + 13. │ └─vctrs::data_frame(..., .name_repair = "minimal") + 14. └─vctrs:::stop_recycle_incompatible_size(...) + 15. └─vctrs:::stop_vctrs(...) + 16. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call) + + [ FAIL 8 | WARN 0 | SKIP 18 | PASS 723 ] + Error: Test failures + Execution halted + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘Facets.Rmd’ using rmarkdown + + Quitting from lines 33-39 [wrap_mimick] (Facets.Rmd) + Error: processing vignette 'Facets.Rmd' failed with diagnostics: + Can't recycle `ROW` (size 0) to size 7. + --- failed re-building ‘Facets.Rmd’ + + --- re-building ‘Miscellaneous.Rmd’ using rmarkdown + ``` + +## In both + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘Facets.Rmd’ + ... + Loading required package: ggplot2 + + > p <- ggplot(mpg, aes(displ, hwy, colour = as.factor(cyl))) + + + geom_point() + labs(x = "Engine displacement", y = "Highway miles per gallon") + .... [TRUNCATED] + + > p + facet_wrap2(vars(class)) + + ... + ℹ Error occurred in the 1st layer. + Caused by error in `setup_params()`: + ! A discrete 'nbinom' distribution cannot be fitted to continuous data. + Execution halted + + ‘Facets.Rmd’ using ‘UTF-8’... failed + ‘Miscellaneous.Rmd’ using ‘UTF-8’... OK + ‘PositionGuides.Rmd’ using ‘UTF-8’... OK + ‘Statistics.Rmd’ using ‘UTF-8’... failed + ‘ggh4x.Rmd’ using ‘UTF-8’... OK + ``` + +# ggheatmap + +
+ +* Version: 2.2 +* GitHub: NA +* Source code: https://github.com/cran/ggheatmap +* Date/Publication: 2022-09-10 13:32:55 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "ggheatmap")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggheatmap’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘ggheatmap’ + See ‘/tmp/workdir/ggheatmap/new/ggheatmap.Rcheck/00install.out’ for details. + ``` + +# ggScatRidges + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/matbou85/ggScatRidges +* Source code: https://github.com/cran/ggScatRidges +* Date/Publication: 2024-03-25 10:20:05 UTC +* Number of recursive dependencies: 117 + +Run `revdepcheck::cloud_details(, "ggScatRidges")` for more info + +
+ +## Newly broken + +* checking whether package ‘ggScatRidges’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘ggScatRidges’ + See ‘/tmp/workdir/ggScatRidges/new/ggScatRidges.Rcheck/00install.out’ for details. + ``` + +# GimmeMyPlot + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/GimmeMyPlot +* Date/Publication: 2023-10-18 16:10:02 UTC +* Number of recursive dependencies: 111 + +Run `revdepcheck::cloud_details(, "GimmeMyPlot")` for more info + +
+ +## Newly broken + +* checking whether package ‘GimmeMyPlot’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘GimmeMyPlot’ + See ‘/tmp/workdir/GimmeMyPlot/new/GimmeMyPlot.Rcheck/00install.out’ for details. + ``` + +# hilldiv + +
+ +* Version: 1.5.1 +* GitHub: https://github.com/anttonalberdi/hilldiv +* Source code: https://github.com/cran/hilldiv +* Date/Publication: 2019-10-01 14:40:02 UTC +* Number of recursive dependencies: 153 + +Run `revdepcheck::cloud_details(, "hilldiv")` for more info + +
+ +## Newly broken + +* checking whether package ‘hilldiv’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘hilldiv’ + See ‘/tmp/workdir/hilldiv/new/hilldiv.Rcheck/00install.out’ for details. + ``` + +# hJAM + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/lailylajiang/hJAM +* Source code: https://github.com/cran/hJAM +* Date/Publication: 2020-02-20 14:50:05 UTC +* Number of recursive dependencies: 101 + +Run `revdepcheck::cloud_details(, "hJAM")` for more info + +
+ +## Newly broken + +* checking whether package ‘hJAM’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘hJAM’ + See ‘/tmp/workdir/hJAM/new/hJAM.Rcheck/00install.out’ for details. + ``` + +# iglu + +
+ +* Version: 4.0.0 +* GitHub: https://github.com/irinagain/iglu +* Source code: https://github.com/cran/iglu +* Date/Publication: 2024-02-23 17:50:02 UTC +* Number of recursive dependencies: 125 + +Run `revdepcheck::cloud_details(, "iglu")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘iglu-Ex.R’ failed + The error most likely occurred in: + + > ### Name: mage_ma_single + > ### Title: Calculates Mean Amplitude of Glycemic Excursions (see "mage") + > ### Aliases: mage_ma_single + > + > ### ** Examples + > + > data(example_data_1_subject) + ... + 12. └─ggplot2 (local) transform_df(..., self = self) + 13. └─base::lapply(df[aesthetics], self$transform) + 14. └─ggplot2 (local) FUN(X[[i]], ...) + 15. └─ggplot2 (local) transform(..., self = self) + 16. └─ggproto_parent(ScaleContinuous, self)$transform(x) + 17. └─ggplot2 (local) transform(..., self = self) + 18. └─transformation$transform(x) + 19. └─cli::cli_abort("{.fun transform_time} works with objects of class {.cls POSIXct} only") + 20. └─rlang::abort(...) + Execution halted + ``` + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘MAGE.Rmd’ + ... + + > fig1data <- example_data_1_subject[1:200, ] + + > mage(fig1data, plot = TRUE, show_ma = TRUE, title = "Glucose Trace - Subject 1") + + When sourcing ‘MAGE.R’: + Error: ℹ In index: 1. + Caused by error in `transformation$transform()`: + ! `transform_time()` works with objects of class only + Execution halted + + ‘AGP_and_Episodes.Rmd’ using ‘UTF-8’... OK + ‘MAGE.Rmd’ using ‘UTF-8’... failed + ‘iglu.Rmd’ using ‘UTF-8’... OK + ‘lasagna_plots.Rmd’ using ‘UTF-8’... OK + ‘metrics_list.Rmd’ using ‘UTF-8’... OK + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘AGP_and_Episodes.Rmd’ using rmarkdown + ``` + +# ImFoR + +
+ +* Version: 0.1.0 +* GitHub: NA +* Source code: https://github.com/cran/ImFoR +* Date/Publication: 2023-09-21 18:50:02 UTC +* Number of recursive dependencies: 173 + +Run `revdepcheck::cloud_details(, "ImFoR")` for more info + +
+ +## Newly broken + +* checking whether package ‘ImFoR’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘ImFoR’ + See ‘/tmp/workdir/ImFoR/new/ImFoR.Rcheck/00install.out’ for details. + ``` + +# iNEXT.4steps + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/KaiHsiangHu/iNEXT.4steps +* Source code: https://github.com/cran/iNEXT.4steps +* Date/Publication: 2024-04-10 20:00:05 UTC +* Number of recursive dependencies: 107 + +Run `revdepcheck::cloud_details(, "iNEXT.4steps")` for more info + +
+ +## Newly broken + +* checking whether package ‘iNEXT.4steps’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘iNEXT.4steps’ + See ‘/tmp/workdir/iNEXT.4steps/new/iNEXT.4steps.Rcheck/00install.out’ for details. + ``` + +# insane + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/mcanouil/insane +* Source code: https://github.com/cran/insane +* Date/Publication: 2023-11-14 21:50:02 UTC +* Number of recursive dependencies: 127 + +Run `revdepcheck::cloud_details(, "insane")` for more info + +
+ +## Newly broken + +* checking whether package ‘insane’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘insane’ + See ‘/tmp/workdir/insane/new/insane.Rcheck/00install.out’ for details. + ``` + +# MarketMatching + +
+ +* Version: 1.2.1 +* GitHub: NA +* Source code: https://github.com/cran/MarketMatching +* Date/Publication: 2024-01-31 09:40:02 UTC +* Number of recursive dependencies: 73 + +Run `revdepcheck::cloud_details(, "MarketMatching")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... ERROR + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘MarketMatching-Vignette.Rmd’ using rmarkdown_notangle + + Quitting from lines 114-115 [unnamed-chunk-3] (MarketMatching-Vignette.Rmd) + Error: processing vignette 'MarketMatching-Vignette.Rmd' failed with diagnostics: + `transform_date()` works with objects of class only + --- failed re-building ‘MarketMatching-Vignette.Rmd’ + + SUMMARY: processing the following file failed: + ‘MarketMatching-Vignette.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# mc2d + +
+ +* Version: 0.2.0 +* GitHub: NA +* Source code: https://github.com/cran/mc2d +* Date/Publication: 2023-07-17 16:00:02 UTC +* Number of recursive dependencies: 84 + +Run `revdepcheck::cloud_details(, "mc2d")` for more info + +
+ +## Newly broken + +* checking whether package ‘mc2d’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘mc2d’ + See ‘/tmp/workdir/mc2d/new/mc2d.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘docmcEnglish.Rnw’ using Sweave + Loading required package: mvtnorm + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘mc2d’ + + Attaching package: ‘mc2d’ + + The following objects are masked from ‘package:base’: + + pmax, pmin + ... + l.179 \RequirePackage{grfext}\relax + ^^M + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘mc2dLmEnglish.rnw’ + + SUMMARY: processing the following files failed: + ‘docmcEnglish.Rnw’ ‘mc2dLmEnglish.rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# MetaIntegrator + +
+ +* Version: 2.1.3 +* GitHub: NA +* Source code: https://github.com/cran/MetaIntegrator +* Date/Publication: 2020-02-26 13:00:11 UTC +* Number of recursive dependencies: 178 + +Run `revdepcheck::cloud_details(, "MetaIntegrator")` for more info + +
+ +## Newly broken + +* checking whether package ‘MetaIntegrator’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘MetaIntegrator’ + See ‘/tmp/workdir/MetaIntegrator/new/MetaIntegrator.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.8Mb + sub-directories of 1Mb or more: + data 3.9Mb + doc 2.1Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘BiocManager’ ‘DT’ ‘GEOmetadb’ ‘RMySQL’ ‘RSQLite’ ‘gplots’ ‘pheatmap’ + ‘readr’ + All declared Imports should be used. + ``` + +# MF.beta4 + +
+ +* Version: 1.0.3 +* GitHub: https://github.com/AnneChao/MF.beta4 +* Source code: https://github.com/cran/MF.beta4 +* Date/Publication: 2024-04-16 16:30:02 UTC +* Number of recursive dependencies: 173 + +Run `revdepcheck::cloud_details(, "MF.beta4")` for more info + +
+ +## Newly broken + +* checking whether package ‘MF.beta4’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘MF.beta4’ + See ‘/tmp/workdir/MF.beta4/new/MF.beta4.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘Introduction.Rnw’ using Sweave + Error: processing vignette 'Introduction.Rnw' failed with diagnostics: + Running 'texi2dvi' on 'Introduction.tex' failed. + LaTeX errors: + ! LaTeX Error: File `pdfpages.sty' not found. + + Type X to quit or to proceed, + or enter new name. (Default extension: sty) + ... + l.4 ^^M + + ! ==> Fatal error occurred, no output PDF file produced! + --- failed re-building ‘Introduction.Rnw’ + + SUMMARY: processing the following file failed: + ‘Introduction.Rnw’ + + Error: Vignette re-building failed. + Execution halted + ``` + +# MIMSunit + +
+ +* Version: 0.11.2 +* GitHub: https://github.com/mhealthgroup/MIMSunit +* Source code: https://github.com/cran/MIMSunit +* Date/Publication: 2022-06-21 11:00:09 UTC +* Number of recursive dependencies: 114 + +Run `revdepcheck::cloud_details(, "MIMSunit")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘MIMSunit-Ex.R’ failed + The error most likely occurred in: + + > ### Name: illustrate_extrapolation + > ### Title: Plot illustrations about extrapolation in illustration style. + > ### Aliases: illustrate_extrapolation + > + > ### ** Examples + > + > # Use the maxed-out data for the conceptual diagram + ... + 12. └─ggplot2 (local) transform_df(..., self = self) + 13. └─base::lapply(df[aesthetics], self$transform) + 14. └─ggplot2 (local) FUN(X[[i]], ...) + 15. └─ggplot2 (local) transform(..., self = self) + 16. └─ggproto_parent(ScaleContinuous, self)$transform(x) + 17. └─ggplot2 (local) transform(..., self = self) + 18. └─transformation$transform(x) + 19. └─cli::cli_abort("{.fun transform_time} works with objects of class {.cls POSIXct} only") + 20. └─rlang::abort(...) + Execution halted + ``` + +# missingHE + +
+ +* Version: 1.5.0 +* GitHub: NA +* Source code: https://github.com/cran/missingHE +* Date/Publication: 2023-03-21 08:50:02 UTC +* Number of recursive dependencies: 151 + +Run `revdepcheck::cloud_details(, "missingHE")` for more info + +
+ +## Newly broken + +* checking whether package ‘missingHE’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘missingHE’ + See ‘/tmp/workdir/missingHE/new/missingHE.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘mcmcr’ + All declared Imports should be used. + ``` + +# MSPRT + +
+ +* Version: 3.0 +* GitHub: NA +* Source code: https://github.com/cran/MSPRT +* Date/Publication: 2020-11-13 10:20:05 UTC +* Number of recursive dependencies: 87 + +Run `revdepcheck::cloud_details(, "MSPRT")` for more info + +
+ +## Newly broken + +* checking whether package ‘MSPRT’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘MSPRT’ + See ‘/tmp/workdir/MSPRT/new/MSPRT.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘datasets’ ‘grDevices’ ‘graphics’ ‘iterators’ ‘methods’ + All declared Imports should be used. + ``` + +# nzelect + +
+ +* Version: 0.4.0 +* GitHub: NA +* Source code: https://github.com/cran/nzelect +* Date/Publication: 2017-10-02 20:35:23 UTC +* Number of recursive dependencies: 95 + +Run `revdepcheck::cloud_details(, "nzelect")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘nzelect-Ex.R’ failed + The error most likely occurred in: + + > ### Name: polls + > ### Title: New Zealand Opinion Polls + > ### Aliases: polls + > ### Keywords: datasets + > + > ### ** Examples + > + ... + 10. └─ggplot2 (local) FUN(X[[i]], ...) + 11. └─scale$transform_df(df = df) + 12. └─ggplot2 (local) transform_df(..., self = self) + 13. └─base::lapply(df[aesthetics], self$transform) + 14. └─ggplot2 (local) FUN(X[[i]], ...) + 15. └─ggplot2 (local) transform(..., self = self) + 16. └─transformation$transform(x) + 17. └─cli::cli_abort("{.fun transform_date} works with objects of class {.cls Date} only") + 18. └─rlang::abort(...) + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.9Mb + sub-directories of 1Mb or more: + data 5.6Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 6409 marked UTF-8 strings + ``` + +# OenoKPM + +
+ +* Version: 2.4.1 +* GitHub: NA +* Source code: https://github.com/cran/OenoKPM +* Date/Publication: 2024-04-08 19:20:10 UTC +* Number of recursive dependencies: 85 + +Run `revdepcheck::cloud_details(, "OenoKPM")` for more info + +
+ +## Newly broken + +* checking whether package ‘OenoKPM’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘OenoKPM’ + See ‘/tmp/workdir/OenoKPM/new/OenoKPM.Rcheck/00install.out’ for details. + ``` + +# posologyr + +
+ +* Version: 1.2.4 +* GitHub: https://github.com/levenc/posologyr +* Source code: https://github.com/cran/posologyr +* Date/Publication: 2024-02-09 11:50:02 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "posologyr")` for more info + +
+ +## Newly broken + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘a_priori_dosing.Rmd’ + ... + 16: source(output, echo = TRUE) + 17: doTryCatch(return(expr), name, parentenv, handler) + 18: tryCatchOne(expr, names, parentenv, handlers[[1L]]) + 19: tryCatchList(expr, classes, parentenv, handlers) + 20: tryCatch({ source(output, echo = TRUE)}, error = function(e) { cat("\n When sourcing ", sQuote(output), ":\n", sep = "") stop(conditionMessage(e), call. = FALSE, domain = NA)}) + 21: tools:::.run_one_vignette("a_priori_dosing.Rmd", "/tmp/workdir/posologyr/new/posologyr.Rcheck/00_pkg_src/posologyr/vignettes", encoding = "UTF-8", pkgdir = "/tmp/workdir/posologyr/new/posologyr.Rcheck/00_pkg_src/posologyr") + An irrecoverable exception occurred. R is aborting now ... + ... + Segmentation fault + + ... incomplete output. Crash? + + ‘a_posteriori_dosing.Rmd’ using ‘UTF-8’... OK + ‘a_priori_dosing.Rmd’ using ‘UTF-8’... failed to complete the test + ‘auc_based_dosing.Rmd’ using ‘UTF-8’... OK + ‘multiple_endpoints.Rmd’ using ‘UTF-8’... OK + ‘patient_data_input.Rmd’ using ‘UTF-8’... OK + ‘posologyr_user_defined_models.Rmd’ using ‘UTF-8’... OK + ``` + +# qicharts + +
+ +* Version: 0.5.8 +* GitHub: NA +* Source code: https://github.com/cran/qicharts +* Date/Publication: 2021-04-20 12:20:03 UTC +* Number of recursive dependencies: 56 + +Run `revdepcheck::cloud_details(, "qicharts")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘qicharts-Ex.R’ failed + The error most likely occurred in: + + > ### Name: tcc + > ### Title: Trellis Control Charts + > ### Aliases: tcc + > + > ### ** Examples + > + > # Run chart of 24 random normal variables + ... + 10. └─ggplot2 (local) FUN(X[[i]], ...) + 11. └─scale$transform_df(df = df) + 12. └─ggplot2 (local) transform_df(..., self = self) + 13. └─base::lapply(df[aesthetics], self$transform) + 14. └─ggplot2 (local) FUN(X[[i]], ...) + 15. └─ggplot2 (local) transform(..., self = self) + 16. └─transformation$transform(x) + 17. └─cli::cli_abort("{.fun transform_date} works with objects of class {.cls Date} only") + 18. └─rlang::abort(...) + Execution halted + ``` + +# qicharts2 + +
+ +* Version: 0.7.5 +* GitHub: https://github.com/anhoej/qicharts2 +* Source code: https://github.com/cran/qicharts2 +* Date/Publication: 2024-05-09 06:20:03 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "qicharts2")` for more info + +
+ +## Newly broken + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘qicharts2.Rmd’ + ... + > qic(month, n, notes = notes, data = cdi, decimals = 0, + + title = "Hospital acquired Clostridium difficile infections", + + ylab = "Count", x .... [TRUNCATED] + + > qic(month, n, data = cdi, decimals = 0, freeze = 24, + + part.labels = c("Baseline", "Intervention"), title = "Hospital acquired Clostridium diff ..." ... [TRUNCATED] + + When sourcing ‘qicharts2.R’: + Error: `transform_time()` works with objects of class only + Execution halted + + ‘qicharts2.Rmd’ using ‘UTF-8’... failed + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + --- re-building ‘qicharts2.Rmd’ using rmarkdown + ``` + +# QuadratiK + +
+ +* Version: 1.1.0 +* GitHub: https://github.com/giovsaraceno/QuadratiK-package +* Source code: https://github.com/cran/QuadratiK +* Date/Publication: 2024-05-14 13:50:06 UTC +* Number of recursive dependencies: 131 + +Run `revdepcheck::cloud_details(, "QuadratiK")` for more info + +
+ +## Newly broken + +* checking whether package ‘QuadratiK’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘QuadratiK’ + See ‘/tmp/workdir/QuadratiK/new/QuadratiK.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 14.6Mb + sub-directories of 1Mb or more: + libs 12.9Mb + ``` + +# RCTrep + +
+ +* Version: 1.2.0 +* GitHub: https://github.com/duolajiang/RCTrep +* Source code: https://github.com/cran/RCTrep +* Date/Publication: 2023-11-02 14:40:02 UTC +* Number of recursive dependencies: 166 + +Run `revdepcheck::cloud_details(, "RCTrep")` for more info + +
+ +## Newly broken + +* checking whether package ‘RCTrep’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘RCTrep’ + See ‘/tmp/workdir/RCTrep/new/RCTrep.Rcheck/00install.out’ for details. + ``` + +# scdtb + +
+ +* Version: 0.1.0 +* GitHub: https://github.com/mightymetrika/scdtb +* Source code: https://github.com/cran/scdtb +* Date/Publication: 2024-04-30 08:50:02 UTC +* Number of recursive dependencies: 97 + +Run `revdepcheck::cloud_details(, "scdtb")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > # This file is part of the standard setup for testthat. + > # It is recommended that you do not modify it. + > # + > # Where should you do additional test configuration? + > # Learn more about the roles of various files in: + > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview + > # * https://testthat.r-lib.org/articles/special-files.html + ... + Error in `nlme::gls(model = mod_form, data = .df, method = "REML", correlation = nlme::corAR1(form = re_form), + ...)`: false convergence (8) + Backtrace: + ▆ + 1. └─scdtb::mixed_model_analysis(...) at test-mixed_model_analysis.R:114:3 + 2. └─nlme::gls(...) + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 45 ] + Error: Test failures + Execution halted + ``` + +# SCOUTer + +
+ +* Version: 1.0.0 +* GitHub: NA +* Source code: https://github.com/cran/SCOUTer +* Date/Publication: 2020-06-30 09:30:03 UTC +* Number of recursive dependencies: 99 + +Run `revdepcheck::cloud_details(, "SCOUTer")` for more info + +
+ +## Newly broken + +* checking whether package ‘SCOUTer’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘SCOUTer’ + See ‘/tmp/workdir/SCOUTer/new/SCOUTer.Rcheck/00install.out’ for details. + ``` + +# sievePH + +
+ +* Version: 1.0.4 +* GitHub: https://github.com/mjuraska/sievePH +* Source code: https://github.com/cran/sievePH +* Date/Publication: 2023-02-03 18:40:02 UTC +* Number of recursive dependencies: 82 -Run `revdepcheck::cloud_details(, "ggh4x")` for more info +Run `revdepcheck::cloud_details(, "sievePH")` for more info + +
+ +## Newly broken + +* checking whether package ‘sievePH’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘sievePH’ + See ‘/tmp/workdir/sievePH/new/sievePH.Rcheck/00install.out’ for details. + ``` + +# SouthParkRshiny + +
+ +* Version: 1.0.0 +* GitHub: https://github.com/Amalan-ConStat/SouthParkRshiny +* Source code: https://github.com/cran/SouthParkRshiny +* Date/Publication: 2024-03-09 11:10:08 UTC +* Number of recursive dependencies: 118 + +Run `revdepcheck::cloud_details(, "SouthParkRshiny")` for more info + +
+ +## Newly broken + +* checking whether package ‘SouthParkRshiny’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘SouthParkRshiny’ + See ‘/tmp/workdir/SouthParkRshiny/new/SouthParkRshiny.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.6Mb + sub-directories of 1Mb or more: + data 8.0Mb + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 1562 marked UTF-8 strings + ``` + +# SqueakR + +
+ +* Version: 1.3.0 +* GitHub: https://github.com/osimon81/SqueakR +* Source code: https://github.com/cran/SqueakR +* Date/Publication: 2022-06-28 09:20:04 UTC +* Number of recursive dependencies: 142 + +Run `revdepcheck::cloud_details(, "SqueakR")` for more info + +
+ +## Newly broken + +* checking whether package ‘SqueakR’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘SqueakR’ + See ‘/tmp/workdir/SqueakR/new/SqueakR.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘SqueakR.Rmd’ + ... + $ experimenters : NULL + $ experimental_data: list() + + > my_new_data <- add_timepoint_data(data_path = "../inst/extdata/Example_Mouse_Data.xlsx", + + t1 = 5, t2 = 25) + Adding call features Excel file to workspace... + + When sourcing ‘SqueakR.R’: + Error: `path` does not exist: ‘../inst/extdata/Example_Mouse_Data.xlsx’ + Execution halted + + ‘SqueakR.Rmd’ using ‘UTF-8’... failed + ``` + +* checking installed package size ... NOTE + ``` + installed size is 8.8Mb + sub-directories of 1Mb or more: + doc 8.2Mb + ``` + +# survminer + +
+ +* Version: 0.4.9 +* GitHub: https://github.com/kassambara/survminer +* Source code: https://github.com/cran/survminer +* Date/Publication: 2021-03-09 09:50:03 UTC +* Number of recursive dependencies: 130 + +Run `revdepcheck::cloud_details(, "survminer")` for more info + +
+ +## Newly broken + +* checking whether package ‘survminer’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘survminer’ + See ‘/tmp/workdir/survminer/new/survminer.Rcheck/00install.out’ for details. + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 6.3Mb + sub-directories of 1Mb or more: + doc 5.5Mb + ``` + +# symptomcheckR + +
+ +* Version: 0.1.3 +* GitHub: https://github.com/ma-kopka/symptomcheckR +* Source code: https://github.com/cran/symptomcheckR +* Date/Publication: 2024-04-16 20:40:06 UTC +* Number of recursive dependencies: 101 + +Run `revdepcheck::cloud_details(, "symptomcheckR")` for more info + +
+ +## Newly broken + +* checking whether package ‘symptomcheckR’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘symptomcheckR’ + See ‘/tmp/workdir/symptomcheckR/new/symptomcheckR.Rcheck/00install.out’ for details. + ``` + +# tcgaViz + +
+ +* Version: 1.0.2 +* GitHub: NA +* Source code: https://github.com/cran/tcgaViz +* Date/Publication: 2023-04-04 15:40:02 UTC +* Number of recursive dependencies: 139 + +Run `revdepcheck::cloud_details(, "tcgaViz")` for more info + +
+ +## Newly broken + +* checking whether package ‘tcgaViz’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘tcgaViz’ + See ‘/tmp/workdir/tcgaViz/new/tcgaViz.Rcheck/00install.out’ for details. + ``` + +# TestGardener + +
+ +* Version: 3.3.3 +* GitHub: NA +* Source code: https://github.com/cran/TestGardener +* Date/Publication: 2024-03-20 13:50:02 UTC +* Number of recursive dependencies: 131 + +Run `revdepcheck::cloud_details(, "TestGardener")` for more info + +
+ +## Newly broken + +* checking whether package ‘TestGardener’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘TestGardener’ + See ‘/tmp/workdir/TestGardener/new/TestGardener.Rcheck/00install.out’ for details. + ``` + +# tidydr + +
+ +* Version: 0.0.5 +* GitHub: https://github.com/YuLab-SMU/tidydr +* Source code: https://github.com/cran/tidydr +* Date/Publication: 2023-03-08 09:20:02 UTC +* Number of recursive dependencies: 71 + +Run `revdepcheck::cloud_details(, "tidydr")` for more info + +
+ +## Newly broken + +* checking whether package ‘tidydr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘tidydr’ ... +** package ‘tidydr’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in get(x, envir = ns, inherits = FALSE) : + object 'len0_null' not found +Error: unable to load R code in package ‘tidydr’ +Execution halted +ERROR: lazy loading failed for package ‘tidydr’ +* removing ‘/tmp/workdir/tidydr/new/tidydr.Rcheck/tidydr’ + + +``` +### CRAN + +``` +* installing *source* package ‘tidydr’ ... +** package ‘tidydr’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (tidydr) + + +``` +# tis + +
+ +* Version: 1.39 +* GitHub: NA +* Source code: https://github.com/cran/tis +* Date/Publication: 2021-09-28 19:50:02 UTC +* Number of recursive dependencies: 15 + +Run `revdepcheck::cloud_details(, "tis")` for more info
@@ -16,174 +2367,213 @@ Run `revdepcheck::cloud_details(, "ggh4x")` for more info * checking examples ... ERROR ``` - Running examples in ‘ggh4x-Ex.R’ failed + Running examples in ‘tis-Ex.R’ failed The error most likely occurred in: - > ### Name: coord_axes_inside - > ### Title: Cartesian coordinates with interior axes - > ### Aliases: coord_axes_inside + > ### Name: fortify.tis + > ### Title: Fortify a tis object + > ### Aliases: fortify.tis > > ### ** Examples > - > # A standard plot + > if(require("ggplot2") && require("reshape")) { ... - > p + coord_axes_inside() - Theme element `panel.background` is missing - Theme element `panel.grid.minor.y` is missing - Theme element `panel.grid.minor.x` is missing - Theme element `panel.grid.major.y` is missing - Theme element `panel.grid.major.x` is missing - Error in UseMethod("element_grob") : - no applicable method for 'element_grob' applied to an object of class "NULL" - Calls: ... lapply -> FUN -> draw_axis_labels -> exec -> + 10. └─ggplot2 (local) FUN(X[[i]], ...) + 11. └─scale$transform_df(df = df) + 12. └─ggplot2 (local) transform_df(..., self = self) + 13. └─base::lapply(df[aesthetics], self$transform) + 14. └─ggplot2 (local) FUN(X[[i]], ...) + 15. └─ggplot2 (local) transform(..., self = self) + 16. └─transformation$transform(x) + 17. └─cli::cli_abort("{.fun transform_date} works with objects of class {.cls Date} only") + 18. └─rlang::abort(...) Execution halted ``` -* checking tests ... ERROR +## In both + +* checking package dependencies ... NOTE ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(ggh4x) - Loading required package: ggplot2 - > - > test_check("ggh4x") - Theme element `panel.background` is missing - Theme element `panel.grid.minor.y` is missing - ... - 16. └─ggplot2 (local) build_labels(...) - 17. └─base::lapply(...) - 18. └─ggplot2 (local) FUN(X[[i]], ...) - 19. └─ggplot2:::draw_axis_labels(...) - 20. ├─rlang::exec(...) - 21. └─ggplot2 (local) ``(...) - - [ FAIL 1 | WARN 0 | SKIP 18 | PASS 750 ] - Error: Test failures - Execution halted + Package which this enhances but not available for checking: ‘zoo’ ``` -* checking re-building of vignette outputs ... ERROR +# UniprotR + +
+ +* Version: 2.4.0 +* GitHub: https://github.com/Proteomicslab57357/UniprotR +* Source code: https://github.com/cran/UniprotR +* Date/Publication: 2024-03-05 15:10:02 UTC +* Number of recursive dependencies: 192 + +Run `revdepcheck::cloud_details(, "UniprotR")` for more info + +
+ +## Newly broken + +* checking whether package ‘UniprotR’ can be installed ... WARNING ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘Facets.Rmd’ using rmarkdown - --- finished re-building ‘Facets.Rmd’ - - --- re-building ‘Miscellaneous.Rmd’ using rmarkdown - - Quitting from lines 199-204 [unnamed-chunk-13] (Miscellaneous.Rmd) - Error: processing vignette 'Miscellaneous.Rmd' failed with diagnostics: - no applicable method for 'element_grob' applied to an object of class "NULL" - ... - --- finished re-building ‘Statistics.Rmd’ - - --- re-building ‘ggh4x.Rmd’ using rmarkdown - --- finished re-building ‘ggh4x.Rmd’ - - SUMMARY: processing the following file failed: - ‘Miscellaneous.Rmd’ - - Error: Vignette re-building failed. - Execution halted + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘UniprotR’ + See ‘/tmp/workdir/UniprotR/new/UniprotR.Rcheck/00install.out’ for details. ``` -# MplusAutomation +# VALERIE
-* Version: 1.1.1 -* GitHub: https://github.com/michaelhallquist/MplusAutomation -* Source code: https://github.com/cran/MplusAutomation -* Date/Publication: 2024-01-30 23:40:02 UTC -* Number of recursive dependencies: 89 +* Version: 1.1.0 +* GitHub: NA +* Source code: https://github.com/cran/VALERIE +* Date/Publication: 2020-07-10 10:20:13 UTC +* Number of recursive dependencies: 133 -Run `revdepcheck::cloud_details(, "MplusAutomation")` for more info +Run `revdepcheck::cloud_details(, "VALERIE")` for more info
## Newly broken +* checking whether package ‘VALERIE’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘VALERIE’ + See ‘/tmp/workdir/VALERIE/new/VALERIE.Rcheck/00install.out’ for details. + ``` + +## In both + * checking installed package size ... NOTE ``` - installed size is 5.4Mb + installed size is 9.6Mb sub-directories of 1Mb or more: - R 3.1Mb - data 1.0Mb + extdata 8.7Mb ``` -# PlasmaMutationDetector +# vannstats
-* Version: 1.7.2 +* Version: 1.3.4.14 * GitHub: NA -* Source code: https://github.com/cran/PlasmaMutationDetector -* Date/Publication: 2018-06-11 07:43:09 UTC -* Number of recursive dependencies: 107 +* Source code: https://github.com/cran/vannstats +* Date/Publication: 2023-04-15 04:30:02 UTC +* Number of recursive dependencies: 101 -Run `revdepcheck::cloud_details(, "PlasmaMutationDetector")` for more info +Run `revdepcheck::cloud_details(, "vannstats")` for more info
## Newly broken -* checking installed package size ... NOTE +* checking whether package ‘vannstats’ can be installed ... WARNING ``` - installed size is 5.1Mb - sub-directories of 1Mb or more: - extdata 4.0Mb + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘vannstats’ + See ‘/tmp/workdir/vannstats/new/vannstats.Rcheck/00install.out’ for details. ``` -# Superpower +# vici
-* Version: 0.2.0 -* GitHub: https://github.com/arcaldwell49/Superpower -* Source code: https://github.com/cran/Superpower -* Date/Publication: 2022-05-17 13:50:02 UTC -* Number of recursive dependencies: 112 +* Version: 0.7.3 +* GitHub: https://github.com/sistm/vici +* Source code: https://github.com/cran/vici +* Date/Publication: 2024-02-02 16:20:02 UTC +* Number of recursive dependencies: 113 -Run `revdepcheck::cloud_details(, "Superpower")` for more info +Run `revdepcheck::cloud_details(, "vici")` for more info
## Newly broken -* checking tests ... ERROR +* checking whether package ‘vici’ can be installed ... WARNING ``` - Running ‘spelling.R’ - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(Superpower) - > - > - > test_check("Superpower") - [ FAIL 2 | WARN 18 | SKIP 13 | PASS 397 ] - ... - 1/1 mismatches - [1] -0.00304 - 0 == -0.00304 - ── Failure ('test_sim_cor.R:38:3'): simulated correlations fit expected values ── - `res5` not equal to 0. - 1/1 mismatches - [1] -0.00322 - 0 == -0.00322 - - [ FAIL 2 | WARN 18 | SKIP 13 | PASS 397 ] - Error: Test failures - Execution halted + Found the following significant warnings: + Warning: replacing previous import ‘ggplot2::ggpar’ by ‘ggpubr::ggpar’ when loading ‘vici’ + See ‘/tmp/workdir/vici/new/vici.Rcheck/00install.out’ for details. ``` -## In both +# Wats -* checking dependencies in R code ... NOTE +
+ +* Version: 1.0.1 +* GitHub: https://github.com/OuhscBbmc/Wats +* Source code: https://github.com/cran/Wats +* Date/Publication: 2023-03-10 22:50:05 UTC +* Number of recursive dependencies: 122 + +Run `revdepcheck::cloud_details(, "Wats")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR ``` - Namespaces in Imports field not imported from: - ‘gridExtra’ ‘mvtnorm’ - All declared Imports should be used. + Running examples in ‘Wats-Ex.R’ failed + The error most likely occurred in: + + > ### Name: cartesian_periodic + > ### Title: Linear Plot with Periodic Elements + > ### Aliases: cartesian_periodic + > ### Keywords: Cartesian + > + > ### ** Examples + > + ... + 10. └─ggplot2 (local) FUN(X[[i]], ...) + 11. └─scale$transform_df(df = df) + 12. └─ggplot2 (local) transform_df(..., self = self) + 13. └─base::lapply(df[aesthetics], self$transform) + 14. └─ggplot2 (local) FUN(X[[i]], ...) + 15. └─ggplot2 (local) transform(..., self = self) + 16. └─transformation$transform(x) + 17. └─cli::cli_abort("{.fun transform_date} works with objects of class {.cls Date} only") + 18. └─rlang::abort(...) + Execution halted + ``` + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘mbr-figures.Rmd’ + ... + + dv_name = "birth_rate", center_function = stats::median, + + spread_function = h_sprea .... [TRUNCATED] + + > cartesian_rolling(ds_linear = portfolio_cartesian$ds_linear, + + x_name = "date", y_name = "birth_rate", stage_id_name = "stage_id", + + chang .... [TRUNCATED] + + When sourcing ‘mbr-figures.R’: + Error: `transform_date()` works with objects of class only + Execution halted + + ‘mbr-figures.Rmd’ using ‘UTF-8’... failed + ``` + +* checking re-building of vignette outputs ... NOTE + ``` + Error(s) in re-building vignettes: + ... + --- re-building ‘mbr-figures.Rmd’ using rmarkdown + + Quitting from lines 135-165 [fig-2-individual-basic] (mbr-figures.Rmd) + Error: processing vignette 'mbr-figures.Rmd' failed with diagnostics: + `transform_date()` works with objects of class only + --- failed re-building ‘mbr-figures.Rmd’ + + SUMMARY: processing the following file failed: + ‘mbr-figures.Rmd’ + + Error: Vignette re-building failed. + Execution halted ``` # xaringanthemer @@ -227,3 +2617,24 @@ Run `revdepcheck::cloud_details(, "xaringanthemer")` for more info Execution halted ``` +## In both + +* checking running R code from vignettes ... ERROR + ``` + Errors in running code in vignettes: + when running code in ‘xaringanthemer.Rmd’ + ... + Warning in file(con, "r") : + cannot open file './../man/fragments/_quick-intro.Rmd': No such file or directory + + Quitting from lines 43-43 [unnamed-chunk-2] (xaringanthemer.Rmd) + + When tangling ‘xaringanthemer.Rmd’: + Error: cannot open the connection + Execution halted + + ‘ggplot2-themes.Rmd’ using ‘UTF-8’... OK + ‘template-variables.Rmd’ using ‘UTF-8’... OK + ‘xaringanthemer.Rmd’ using ‘UTF-8’... failed + ``` + From 3a2842744eeff87f194da4e2bee52712a0df8ab1 Mon Sep 17 00:00:00 2001 From: Teun van den Brand Date: Tue, 4 Jun 2024 11:55:15 +0200 Subject: [PATCH 3/6] Fallbacks for numeric inputs --- R/scale-date.R | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) diff --git a/R/scale-date.R b/R/scale-date.R index 572761af9a..f4ad721445 100644 --- a/R/scale-date.R +++ b/R/scale-date.R @@ -362,6 +362,13 @@ ScaleContinuousDatetime <- ggproto("ScaleContinuousDatetime", ScaleContinuous, self$timezone <- tz self$trans <- transform_time(self$timezone) } + if (is_bare_numeric(x)) { + x <- self$trans$inverse(x) + cli::cli_warn(c( + "A {.cls numeric} value was passed to a {.field Datetime} scale.", + i = "The value was converted to a {obj_type_friendly(x)}." + ), call = self$call) + } ggproto_parent(ScaleContinuous, self)$transform(x) }, map = function(self, x, limits = self$get_limits()) { @@ -401,6 +408,16 @@ ScaleContinuousDate <- ggproto("ScaleContinuousDate", ScaleContinuous, map = function(self, x, limits = self$get_limits()) { self$oob(x, limits) }, + transform = function(self, x) { + if (is_bare_numeric(x)) { + x <- self$trans$inverse(x) + cli::cli_warn(c( + "A {.cls numeric} value was passed to a {.field Date} scale.", + i = "The value was converted to a {obj_type_friendly(x)}." + ), call = self$call) + } + ggproto_parent(ScaleContinuous, self)$transform(x) + }, get_breaks = function(self, limits = self$get_limits()) { breaks <- ggproto_parent(ScaleContinuous, self)$get_breaks(limits) if (is.null(breaks)) { From 42d6ed9d3f286770de0acf22523c64e919a2b329 Mon Sep 17 00:00:00 2001 From: Teun van den Brand Date: Tue, 4 Jun 2024 12:02:41 +0200 Subject: [PATCH 4/6] add news bullet --- NEWS.md | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/NEWS.md b/NEWS.md index 6ba924fb1c..d43701644a 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,10 @@ # ggplot2 (development version) +* All position scales now use the same definition of `x` and `y` aesthetics. + This lets uncommon aesthetics like `xintercept` expand scales as usual. + (#3342, #4966, @teunbrand) +* Bare numeric values provided to Date or Datetime scales get inversely + transformed (cast to Date/POSIXct) with a warning (@teunbrand). * The `arrow.fill` parameter is now applied to more line-based functions: `geom_path()`, `geom_line()`, `geom_step()` `geom_function()`, line geometries in `geom_sf()` and `element_line()`. From a3bac8551ad2246de0927777da51b74b4e36e0c0 Mon Sep 17 00:00:00 2001 From: Teun van den Brand Date: Tue, 4 Jun 2024 12:03:33 +0200 Subject: [PATCH 5/6] improve warning --- R/scale-date.R | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/R/scale-date.R b/R/scale-date.R index f4ad721445..36f8b37d83 100644 --- a/R/scale-date.R +++ b/R/scale-date.R @@ -366,7 +366,7 @@ ScaleContinuousDatetime <- ggproto("ScaleContinuousDatetime", ScaleContinuous, x <- self$trans$inverse(x) cli::cli_warn(c( "A {.cls numeric} value was passed to a {.field Datetime} scale.", - i = "The value was converted to a {obj_type_friendly(x)}." + i = "The value was converted to {obj_type_friendly(x)}." ), call = self$call) } ggproto_parent(ScaleContinuous, self)$transform(x) @@ -413,7 +413,7 @@ ScaleContinuousDate <- ggproto("ScaleContinuousDate", ScaleContinuous, x <- self$trans$inverse(x) cli::cli_warn(c( "A {.cls numeric} value was passed to a {.field Date} scale.", - i = "The value was converted to a {obj_type_friendly(x)}." + i = "The value was converted to {obj_type_friendly(x)}." ), call = self$call) } ggproto_parent(ScaleContinuous, self)$transform(x) From 4e2df9d43beebb93fc907ddbd6cea5fb46eb5273 Mon Sep 17 00:00:00 2001 From: Teun van den Brand Date: Tue, 4 Jun 2024 12:07:12 +0200 Subject: [PATCH 6/6] add test --- tests/testthat/test-scale-date.R | 15 +++++++++++++++ 1 file changed, 15 insertions(+) diff --git a/tests/testthat/test-scale-date.R b/tests/testthat/test-scale-date.R index 83b95c6827..1183fcd756 100644 --- a/tests/testthat/test-scale-date.R +++ b/tests/testthat/test-scale-date.R @@ -68,3 +68,18 @@ test_that("datetime colour scales work", { expect_equal(range(get_layer_data(p)$colour), c("#132B43", "#56B1F7")) }) + +test_that("date(time) scales throw warnings when input is numeric", { + p <- ggplot(data.frame(x = 1, y = 1), aes(x, y)) + geom_point() + + expect_warning( + ggplot_build(p + scale_x_date()), + "The value was converted to a object." + ) + + expect_warning( + ggplot_build(p + scale_x_datetime()), + "The value was converted to a object." + ) + +})