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lines changed Original file line number Diff line number Diff line change @@ -216,9 +216,9 @@ def test(
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test, in that case the parameter threshold would be a significance threshold.
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:param gene_ids: If pval was supplied instead of DETest, use gene_ids to supply the
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vector of gene identifiers (strings) that correspond to the p-values
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- which can be matched against the identifieres in the sets in RefSets.
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+ which can be matched against the identifiers in the sets in RefSets.
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:param threshold: Threshold of parameter scores at which a gene is included as a hit: In the case
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- of differential test p-values in scores, threshold is the siginficance threshold.
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+ of differential test p-values in scores, threshold is the significance threshold.
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:param incl_all_zero: Wehther to include genes in gene universe which were all zero.
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:param all_ids: Set of all gene identifiers, this is used as the background set in the
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hypergeometric test. Only supply this if not all genes were tested
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