fix merge conflict

Merge branch 'main' into n_breaks_for_all

# Conflicts:
#	R/scale-.R

Author: teunbrand

DESCRIPTION

@@ -35,7 +35,7 @@ Imports:
     cli,
     grDevices,
     grid,
-    gtable (>= 0.1.1),
+    gtable (>= 0.3.6),
     isoband,
     lifecycle (> 1.0.1),
     rlang (>= 1.1.0),
@@ -242,10 +242,12 @@ Collate:
     'scales-.R'
     'stat-align.R'
     'stat-bin.R'
+    'stat-summary-2d.R'
     'stat-bin2d.R'
     'stat-bindot.R'
     'stat-binhex.R'
     'stat-boxplot.R'
+    'stat-connect.R'
     'stat-contour.R'
     'stat-count.R'
     'stat-density-2d.R'
@@ -254,6 +256,7 @@ Collate:
     'stat-ellipse.R'
     'stat-function.R'
     'stat-identity.R'
+    'stat-manual.R'
     'stat-qq-line.R'
     'stat-qq.R'
     'stat-quantilemethods.R'
@@ -262,7 +265,6 @@ Collate:
     'stat-smooth-methods.R'
     'stat-smooth.R'
     'stat-sum.R'
-    'stat-summary-2d.R'
     'stat-summary-bin.R'
     'stat-summary-hex.R'
     'stat-summary.R'
@@ -273,6 +275,7 @@ Collate:
     'theme.R'
     'theme-defaults.R'
     'theme-current.R'
+    'theme-sub.R'
     'utilities-break.R'
     'utilities-grid.R'
     'utilities-help.R'

NAMESPACE

@@ -13,13 +13,17 @@ S3method("[[",ggproto)
 S3method("[[<-",uneval)
 S3method(.DollarNames,ggproto)
 S3method(as.data.frame,mapped_discrete)
+S3method(as.gtable,ggplot)
+S3method(as.gtable,ggplot_built)
 S3method(as.list,ggproto)
 S3method(autolayer,default)
 S3method(autoplot,default)
 S3method(c,mapped_discrete)
 S3method(drawDetails,zeroGrob)
 S3method(element_grob,element_blank)
 S3method(element_grob,element_line)
+S3method(element_grob,element_point)
+S3method(element_grob,element_polygon)
 S3method(element_grob,element_rect)
 S3method(element_grob,element_text)
 S3method(format,ggproto)
@@ -94,6 +98,7 @@ S3method(makeContext,dotstackGrob)
 S3method(merge_element,default)
 S3method(merge_element,element)
 S3method(merge_element,element_blank)
+S3method(merge_element,margin)
 S3method(pattern_alpha,GridPattern)
 S3method(pattern_alpha,GridTilingPattern)
 S3method(pattern_alpha,default)
@@ -254,6 +259,7 @@ export(StatBin2d)
 export(StatBindot)
 export(StatBinhex)
 export(StatBoxplot)
+export(StatConnect)
 export(StatContour)
 export(StatContourFilled)
 export(StatCount)
@@ -264,6 +270,7 @@ export(StatEcdf)
 export(StatEllipse)
 export(StatFunction)
 export(StatIdentity)
+export(StatManual)
 export(StatQq)
 export(StatQqLine)
 export(StatQuantile)
@@ -344,6 +351,8 @@ export(element_blank)
 export(element_geom)
 export(element_grob)
 export(element_line)
+export(element_point)
+export(element_polygon)
 export(element_rect)
 export(element_render)
 export(element_text)
@@ -494,6 +503,8 @@ export(layer_sf)
 export(lims)
 export(map_data)
 export(margin)
+export(margin_auto)
+export(margin_part)
 export(max_height)
 export(max_width)
 export(mean_cl_boot)
@@ -676,6 +687,7 @@ export(stat_bin_2d)
 export(stat_bin_hex)
 export(stat_binhex)
 export(stat_boxplot)
+export(stat_connect)
 export(stat_contour)
 export(stat_contour_filled)
 export(stat_count)
@@ -688,6 +700,7 @@ export(stat_ecdf)
 export(stat_ellipse)
 export(stat_function)
 export(stat_identity)
+export(stat_manual)
 export(stat_qq)
 export(stat_qq_line)
 export(stat_quantile)
@@ -720,8 +733,18 @@ export(theme_linedraw)
 export(theme_minimal)
 export(theme_replace)
 export(theme_set)
+export(theme_sub_axis)
+export(theme_sub_axis_bottom)
+export(theme_sub_axis_left)
+export(theme_sub_axis_right)
+export(theme_sub_axis_top)
+export(theme_sub_axis_x)
+export(theme_sub_axis_y)
+export(theme_sub_legend)
+export(theme_sub_panel)
+export(theme_sub_plot)
+export(theme_sub_strip)
 export(theme_test)
-export(theme_transparent)
 export(theme_update)
 export(theme_void)
 export(transform_position)

NEWS.md

@@ -1,5 +1,76 @@
 # ggplot2 (development version)
 
+* `position_fill()` avoids stacking observations of zero (@teunbrand, #6338)
+* New `layer(layout)` argument to interact with facets (@teunbrand, #3062)
+* New `stat_connect()` to connect points via steps or other shapes 
+  (@teunbrand, #6228)
+* Fixed regression with incorrectly drawn gridlines when using `coord_flip()` 
+  (@teunbrand, #6293).
+* Deprecated functions and arguments prior to ggplot2 3.0.0 throw errors instead 
+  of warnings. 
+* Functions and arguments that were soft-deprecated up to ggplot2 3.4.0 now 
+  throw warnings.
+* (internal) layer data can be attenuated with parameter attributes 
+  (@teunbrand, #3175).
+* Date scales silently coerce <POSIXct> to <Date> and datetime scales silently
+  coerce <Date> to <POSIXct> (@laurabrianna, #3533)
+* New parameters for `geom_label()` (@teunbrand and @steveharoz, #5365):
+  * The `linewidth` aesthetic is now applied and replaces the `label.size` 
+    argument.
+  * The `linetype` aesthetic is now applied.
+  * New `border.colour` argument to set the colour of borders.
+  * New `text.colour` argument to set the colour of text.
+* New `element_point()` and `element_polygon()` that can be given to 
+  `theme(point, polygon)` as an extension point (@teunbrand, #6248).
+* Turned off fallback for `size` to `linewidth` translation in 
+  `geom_bar()`/`geom_col()` (#4848).
+* `coord_radial()` now displays no axis instead of throwing an error when
+  a scale has no breaks (@teunbrand, #6271).
+* The `fatten` argument has been deprecated in `geom_boxplot()`, 
+  `geom_crossbar()` and `geom_pointrange()` (@teunbrand, #4881).
+* Axis labels are now preserved better when using `coord_sf(expand = TRUE)` and
+  graticule lines are straight but do not meet the edge (@teunbrand, #2985).
+* Attempt to boost detail in `coord_polar()` and `coord_radial()` near the 
+  center (@teunbrand, #5023)
+* Scale names, guide titles and aesthetic labels can now accept functions 
+  (@teunbrand, #4313)
+* Binned scales with zero-width data expand the default limits by 0.1 
+  (@teunbrand, #5066)
+* New default `geom_qq_line(geom = "abline")` for better clipping in the 
+  vertical direction. In addition, `slope` and `intercept` are new computed
+  variables in `stat_qq_line()` (@teunbrand, #6087).
+* Position adjustments can now have auxiliary aesthetics (@teunbrand).
+    * `position_nudge()` gains `nudge_x` and `nudge_y` aesthetics (#3026, #5445).
+    * `position_dodge()` gains `order` aesthetic (#3022, #3345)
+* More stability for vctrs-based palettes (@teunbrand, #6117).
+* Fixed regression in `guide_bins(reverse = TRUE)` (@teunbrand, #6183).
+* New function family for setting parts of a theme. For example, you can now use 
+  `theme_sub_axis(line, text, ticks, ticks.length, line)` as a substitute for
+  `theme(axis.line, axis.text, axis.ticks, axis.ticks.length, axis.line)`. This
+  should allow slightly terser and more organised theme declarations 
+  (@teunbrand, #5301).
+* `scale_{x/y}_discrete(continuous.limits)` is a new argument to control the
+  display range of discrete scales (@teunbrand, #4174, #6259).
+* `geom_ribbon()` now appropriately warns about, and removes, missing values 
+  (@teunbrand, #6243).
+* `guide_*()` can now accept two inside legend theme elements:
+  `legend.position.inside` and `legend.justification.inside`, allowing inside
+  legends to be placed at different positions. Only inside legends with the same
+  position and justification will be merged (@Yunuuuu, #6210).
+* New stat: `stat_manual()` for arbitrary computations (@teunbrand, #3501)
+* Reversal of a dimension, typically 'x' or 'y', is now controlled by the 
+  `reverse` argument in `coord_cartesian()`, `coord_fixed()`, `coord_radial()`
+  and `coord_sf()`. In `coord_radial()`, this replaces the older `direction` 
+  argument (#4021, @teunbrand).
+* `coord_radial()` displays minor gridlines now (@teunbrand).
+* (internal) `continuous_scale()` and `binned_scale()` sort the `limits` 
+  argument internally (@teunbrand).
+* Theme margins can have NA-units to inherit from parent elements. The new
+  function `margin_part()` has NA-units as default (@teunbrand, #6115)
+* New `margin_auto()` specification for theme margins.
+* New argument `labs(dictionary)` to label based on variable name rather than 
+  based on aesthetic (@teunbrand, #5178)
+* Fixed bug in out-of-bounds binned breaks (@teunbrand, #6054)
 * Binned guides now accept expressions as labels (@teunbrand, #6005)
 * (internal) `Scale$get_labels()` format expressions as lists.
 * In non-orthogonal coordinate systems (`coord_sf()`, `coord_polar()` and 
@@ -24,6 +95,13 @@
   (@teunbrand, #4320)
 * `geom_boxplot()` gains additional arguments to style the colour, linetype and
   linewidths of the box, whiskers, median line and staples (@teunbrand, #5126)
+* `geom_violin()` gains additional arguments to style the colour, linetype and
+  linewidths of the quantiles, which replace the now-deprecated `draw_quantiles` 
+  argument (#5912).
+* (breaking) `geom_violin(quantiles)` now has actual quantiles based on
+  the data, rather than inferred quantiles based on the computed density. The
+  `quantiles` parameter that replaces `draw_quantiles` now belongs to 
+  `stat_ydensity()` instead of `geom_violin()` (@teunbrand, #4120).
 * (internal) Using `after_scale()` in the `Geom*$default_aes()` field is now
   evaluated in the context of data (@teunbrand, #6135)
 * Fixed bug where binned scales wouldn't simultaneously accept transformations
@@ -175,8 +253,8 @@
   and (non-text) margins inherit from (@teunbrand, #5622).
 * `geom_ribbon()` can have varying `fill` or `alpha` in linear coordinate
   systems (@teunbrand, #4690).
-* `geom_tile()` computes default widths and heights per panel instead of
-  per layer (@teunbrand, #5740).
+* `geom_tile()` and `position_jitter()` computes default widths and heights 
+  per panel instead of per layer (@teunbrand, #5740, #3722).
 * The `fill` of the `panel.border` theme setting is ignored and forced to be
   transparent (#5782).
 * `stat_align()` skips computation when there is only 1 group and therefore
@@ -206,18 +284,62 @@
   is setup once in total instead of once per group (@teunbrand, #5971)
 * `facet_grid(space = "free")` can now be combined with `coord_fixed()` 
   (@teunbrand, #4584).
-* `theme_classic()` now has black ticks and text instead of dark gray. In 
-  addition, `theme_classic()`'s axis line end is `"square"` (@teunbrand, #5978).
+* `theme_classic()` has the following changes (@teunbrand, #5978 & #6320):
+    * Axis ticks are now black (`ink`-coloured) instead of dark gray.
+    * Axis line ends are now `"square"`.
+    * The panel grid is now blank at the `panel.grid` hierarchy level instead of 
+    the `panel.grid.major` and `panel.grid.minor` levels.
 * {tibble} is now suggested instead of imported (@teunbrand, #5986)
 * The ellipsis argument is now checked in `fortify()`, `get_alt_text()`, 
   `labs()` and several guides (@teunbrand, #3196).
 * `stat_summary_bin()` no longer ignores `width` parameter (@teunbrand, #4647).
-* Added `keep.zeroes` argument to `stat_bin()` (@teunbrand, #3449)
+* Reintroduced `drop` argument to `stat_bin()` (@teunbrand, #3449)
+* (internal) removed barriers for using 2D structures as aesthetics 
+  (@teunbrand, #4189).
 * `coord_sf()` no longer errors when dealing with empty graticules (@teunbrand, #6052)
 * Added `theme_transparent()` with transparent backgrounds (@topepo).
 * New theme elements `palette.{aes}.discrete` and `palette.{aes}.continuous`. 
   Theme palettes replace palettes in scales where `palette = NULL`, which is 
   the new default in many scales (@teunbrand, #4696).
+* `guide_axis()` no longer reserves space for blank ticks 
+  (@teunbrand, #4722, #6069).
+* `geom_abline()` clips to the panel range in the vertical direction too
+  (@teunbrand, #6086).
+* Added `panel.widths` and `panel.heights` to `theme()` (#5338, @teunbrand).
+* Standardised the calculation of `width`, which are now implemented as
+  aesthetics (@teunbrand, #2800).
+* Stricter check on `register_theme_elements(element_tree)` (@teunbrand, #6162)
+* Added `weight` aesthetic for `stat_ellipse()` (@teunbrand, #5272)
+* Fixed a bug where the `guide_custom(order)` wasn't working (@teunbrand, #6195)
+* All binning stats now use the `boundary`/`center` parametrisation rather
+  than `origin`, following in `stat_bin()`'s footsteps (@teunbrand).
+* `stat_summary_2d()` and `stat_bin_2d()` now deal with zero-range data
+  more elegantly (@teunbrand, #6207).
+* Munching in `coord_polar()` and `coord_radial()` now adds more detail, 
+  particularly for data-points with a low radius near the center 
+  (@teunbrand, #5023).
+* All scales now expose the `aesthetics` parameter (@teunbrand, #5841)
+* Staged expressions are handled more gracefully if legends cannot resolve them 
+  (@teunbrand, #6264).
+* New `theme(legend.key.justification)` to control the alignment of legend keys 
+  (@teunbrand, #3669). 
+* Added `scale_{x/y}_time(date_breaks, date_minor_breaks, date_labels)` 
+  (@teunbrand, #4335).
+* (internal) `legend.key.width` and `legend.key.height` calculations are no
+  longer precomputed before guides are drawn (@teunbrand, #6339)
+* `ggsave()` can write a multi-page pdf file when provided with a list of plots 
+  (@teunbrand, #5093).
+* (internal) When `validate_subclass()` fails to find a class directly, it tries 
+  to retrieve the class via constructor functions (@teunbrand).
+* (internal) The ViewScale class has a `make_fixed_copy()` method to permit 
+  copying trained position scales (#3441).
+* `draw_key_rect()` replaces a `NA` fill by the `colour` aesthetic and 
+  `draw_key_polygon()` has 0 linewidth as internal default (@teunbrand, #5385).
+* Improved consistency of curve direction in `geom_curve()` (@teunbrand, #5069)
+* `linetype = NA` is now interpreted to mean 'no line' instead of raising errors
+  (@teunbrand, #6269).
+* The default colour and fill scales have a new `palette` argument 
+  (@teunbrand, #6064).
 
 # ggplot2 3.5.1
 

R/aes.R

@@ -38,6 +38,13 @@ NULL
 #'
 #'   [Delayed evaluation][aes_eval] for working with computed variables.
 #'
+#' @note
+#' Using `I()` to create objects of class 'AsIs' causes scales to ignore the
+#' variable and assumes the wrapped variable is direct input for the grid
+#' package. Please be aware that variables are sometimes combined, like in
+#' some stats or position adjustments, that may yield unexpected results with
+#' 'AsIs' variables.
+#'
 #' @family aesthetics documentation
 #' @return A list with class `uneval`. Components of the list are either
 #'   quosures or constants.
@@ -283,7 +290,7 @@ is_position_aes <- function(vars) {
 #'
 #' @export
 aes_ <- function(x, y, ...) {
-  deprecate_soft0(
+  deprecate_warn0(
     "3.0.0",
     "aes_()",
     details = "Please use tidy evaluation idioms with `aes()`"
@@ -310,7 +317,7 @@ aes_ <- function(x, y, ...) {
 #' @rdname aes_
 #' @export
 aes_string <- function(x, y, ...) {
-  deprecate_soft0(
+  deprecate_warn0(
     "3.0.0",
     "aes_string()",
     details = c(
@@ -353,7 +360,7 @@ aes_all <- function(vars) {
   # refer to the data mask
   structure(
     lapply(vars, function(x) new_quosure(as.name(x), emptyenv())),
-    class = "uneval"
+    class = c("unlabelled_uneval", "uneval")
   )
 }
 
@@ -367,29 +374,7 @@ aes_all <- function(vars) {
 #' @keywords internal
 #' @export
 aes_auto <- function(data = NULL, ...) {
-  deprecate_warn0("2.0.0", "aes_auto()")
-
-  # detect names of data
-  if (is.null(data)) {
-    cli::cli_abort("{.fn aes_auto} requires a {.cls data.frame} or names of data.frame.")
-  } else if (is.data.frame(data)) {
-    vars <- names(data)
-  } else {
-    vars <- data
-  }
-
-  # automatically detected aes
-  vars <- intersect(ggplot_global$all_aesthetics, vars)
-  names(vars) <- vars
-  aes <- lapply(vars, function(x) parse(text = x)[[1]])
-
-  # explicitly defined aes
-  if (length(match.call()) > 2) {
-    args <- as.list(match.call()[-1])
-    aes <- c(aes, args[names(args) != "data"])
-  }
-
-  structure(rename_aes(aes), class = "uneval")
+  lifecycle::deprecate_stop("2.0.0", "aes_auto()")
 }
 
 mapped_aesthetics <- function(x) {

R/annotation-custom.R

@@ -80,7 +80,7 @@ GeomCustomAnn <- ggproto("GeomCustomAnn", Geom,
     editGrob(grob, vp = vp, name = paste(grob$name, annotation_id()))
   },
 
-  default_aes = aes_(xmin = -Inf, xmax = Inf, ymin = -Inf, ymax = Inf)
+  default_aes = aes(xmin = -Inf, xmax = Inf, ymin = -Inf, ymax = Inf)
 )
 
 annotation_id <- local({

R/annotation-logticks.R

@@ -229,7 +229,7 @@ GeomLogticks <- ggproto("GeomLogticks", Geom,
   },
 
   default_aes = aes(
-    colour = from_theme(ink),
+    colour = from_theme(colour %||% ink),
     linewidth = from_theme(linewidth),
     linetype = from_theme(linetype),
     alpha = 1