Disabling the init-script of SHOGun by setting the property init.shogunInitEnabled to false in the file src/main/resources/META-INF/{{my-project}}-init.properties does not work. The reason is that a property with the same name is defined in the file src/main/resources/META-INF/shogun2-webapp-test-init.properties. You have to set the property init.shogunInitEnabled to false in this file to really disable the init-script.
I guess this is no wanted behaviour?