order_to_agp size = sizes[ctg] KeyError: 'ptg000337l'

[jd3234]

Hi developers,

like some others on this issue board I am encountering the following error when running this command

python3 -m jcvi.assembly.allmaps path --cpus=16 --weightsfile=make_weights_file/maps_weights.txt allmaps/contigs-filt-allmaps.bed contigs.fasta                   --noplot --font=Helvetica


Traceback (most recent call last):
  File "/opt/micromamba/envs/tool/lib/python3.10/runpy.py", line 196, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/opt/micromamba/envs/tool/lib/python3.10/runpy.py", line 86, in _run_code
    exec(code, run_globals)
  File "/opt/micromamba/envs/tool/lib/python3.10/site-packages/jcvi/assembly/allmaps.py", line 2032, in <module>
    main()
  File "/opt/micromamba/envs/tool/lib/python3.10/site-packages/jcvi/assembly/allmaps.py", line 853, in main
    p.dispatch(globals())
  File "/opt/micromamba/envs/tool/lib/python3.10/site-packages/jcvi/apps/base.py", line 140, in dispatch
    globals[action](sys.argv[2:])
  File "/opt/micromamba/envs/tool/lib/python3.10/site-packages/jcvi/assembly/allmaps.py", line 1609, in path
    order_to_agp(s.object, s.tour, sizes, fwagp, gapsize=gapsize, evidence="map")
  File "/opt/micromamba/envs/tool/lib/python3.10/site-packages/jcvi/formats/agp.py", line 797, in order_to_agp
    size = sizes[ctg]
KeyError: 'ptg000337l'

I checked the input fasta if ptg000337l is in there and I can confirm it is there. Could you point please point me into a direction to solve this?

I used the latest version installed via conda.