feat: introduces incremental command line parsing

This commit is the second half of the changes needed to land incremental command
line parsing into `sprocket`. The first half is at stjude-rust-labs/wdl#430.

As indicated in the changes there, this commit also has the side effect of
removing the `wdl` command line tool and putting all of the subcommands in
`sprocket` instead. As such, you'll see many commands be modified to use the
code created in the new `wdl-cli` package _OR_ brand new subcommands (like
`run`).

Author: claymcleod

CHANGELOG.md

@@ -7,9 +7,17 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## Unreleased
 
+### Added
+
+* Introduced the `run` subcommand ([#102](https://github.com/stjude-rust-labs/sprocket/pull/102)).
+
 ### Changed
 
 * Unknown `--except` rules will now emit a warning instead of being silently ignored ([#94](https://github.com/stjude-rust-labs/sprocket/pull/94))
+* Changed the `validate-inputs` subcommand to the more concise `validate` subcommand ([#102](https://github.com/stjude-rust-labs/sprocket/pull/102)).
+* Changed all existing subcommands to use the facilities provided in `wdl-cli` when possible ([#102](https://github.com/stjude-rust-labs/sprocket/pull/102)).
+* Updates the underlying `wdl` dependency to v0.13.1 ([#102](https://github.com/stjude-rust-labs/sprocket/pull/102)).
+
 
 ## 0.11.0 - 04-01-2025