This repository was archived by the owner on Sep 4, 2024. It is now read-only.
This repository was archived by the owner on Sep 4, 2024. It is now read-only.
Error: std::bad_alloc in test-unordered on ppc32 #6
Description
* using log directory ‘/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_R_R-literanger/R-literanger/work/literanger-0.0.2/literanger.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: powerpc-apple-darwin10.0.0d2 (32-bit)
* R was compiled by
gcc-mp-12 (MacPorts gcc12 12.3.0_0) 12.3.0
GNU Fortran (MacPorts gcc12 12.3.0_0) 12.3.0
* running under: OS X Snow Leopard 10.6
* using session charset: UTF-8
* checking for file ‘literanger/DESCRIPTION’ ... OK
* this is package ‘literanger’ version ‘0.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘literanger’ can be installed ... OK
* used C++ compiler: ‘g++-mp-12 (MacPorts gcc12 12.3.0_0) 12.3.0’
* used SDK: ‘NA’‘NA’‘NA’‘NA’‘NA’‘NA’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Error: std::bad_alloc
Backtrace:
▆
1. └─literanger::train(data = dat_class, response_name = "y", unordered_predictors = "partition") at test-unordered.R:52:4
2. └─literanger:::cpp11_train(...)
── Error ('test-unordered.R:178:5'): can predict unobserved levels given unordered predictors ──
Error: std::bad_alloc
Backtrace:
▆
1. └─literanger::train(data = dat_train, response_name = "y", unordered_predictors = "partition") at test-unordered.R:178:4
2. └─literanger:::cpp11_train(...)
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 188 ]
Error: Test failures
Execution halted
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR
P. S. This is not necessarily a problem with the code, since malloc errors show up once in a while when there are duplicate libstdc++ (one belonging to the OS and another to GCC). However, for R we have fixed that problem, and I do not see it now when testing packages. So possibly something assumes 64-bitness?