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Copy file name to clipboardExpand all lines: src/reference-manual/transforms.qmd
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For the transform, Stan uses the first part of an isometric log ratio
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transform; see [@egozcue+etal:2003] for the basic definitions and
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Chapter 3 of [@filzmoser+etal:2018] for the pivot coordinate version
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used here. Stan uses the isometric log ratio transform because it
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results in equal variances across the values of the the constrained sum to zero vector
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because simpler alternatives, such as setting the final element to the negative sum of the first elements; see, e.g.,
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[@seyboldt:2024], do not result in equal variances. The $N - 1$ unconstrained parameters are independent, however, the sum to zero constraint induces a negative correlation across the constrained values.
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used here. Stan uses the isometric log ratio transform because it
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results in equal variances of the the constrained sum to zero
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vector see, e.g.,[@seyboldt:2024]. Simpler alternatives, such as setting the
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final element to the negative sum of the first elements, do not result in
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equal variances. The $N - 1$ unconstrained parameters are independent, however,
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the sum-to-zero constraint induces a negative correlation across the
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