replace other uses of http with https

Author: jgabry

R/bayesplot-package.R

@@ -55,7 +55,7 @@
 #'  To ask a question about \pkg{bayesplot} on the Stan Forums
 #'  forum please visit:
 #'
-#'  \url{http://discourse.mc-stan.org}.
+#'  \url{https://discourse.mc-stan.org}.
 #' }
 #' }
 #'

R/mcmc-parcoord.R

@@ -13,7 +13,7 @@
 #' @param ... Currently ignored.
 #' @param size,alpha Arguments passed on to \code{\link[ggplot2]{geom_line}}.
 #' @param np For models fit using \code{\link{NUTS}} (more generally,
-#'   any \href{http://en.wikipedia.org/wiki/Symplectic_integrator}{symplectic
+#'   any \href{https://en.wikipedia.org/wiki/Symplectic_integrator}{symplectic
 #'   integrator}), an optional data frame providing NUTS
 #'   diagnostic information. The data frame should be the object returned by
 #'   \code{\link{nuts_params}} or one with the same structure.
@@ -51,7 +51,7 @@
 #' @template reference-vis-paper
 #' @references Hartikainen, A. (2017, Aug 23). Concentration of divergences
 #' [Msg 21]. Message posted to The Stan Forums:
-#' \url{http://discourse.mc-stan.org/t/concentration-of-divergences/1590/21}.
+#' \url{https://discourse.mc-stan.org/t/concentration-of-divergences/1590/21}.
 #'
 #' @examples
 #' color_scheme_set("pink")

R/mcmc-traces.R

@@ -29,7 +29,7 @@
 #' @param window An integer vector of length two specifying the limits of a
 #'   range of iterations to display.
 #' @param np For models fit using \code{\link{NUTS}} (more generally, any
-#'   \href{http://en.wikipedia.org/wiki/Symplectic_integrator}{symplectic
+#'   \href{https://en.wikipedia.org/wiki/Symplectic_integrator}{symplectic
 #'   integrator}), an optional data frame providing NUTS diagnostic
 #'   information. The data frame should be the object returned by
 #'   \code{\link{nuts_params}} or one with the same structure. If \code{np} is

man-roxygen/reference-loo.R

@@ -2,4 +2,4 @@
 #'   Bayesian model evaluation using leave-one-out cross-validation and WAIC.
 #'   \emph{Statistics and Computing}. 27(5), 1413--1432.
 #'   doi:10.1007/s11222-016-9696-4. arXiv preprint:
-#'   \url{http://arxiv.org/abs/1507.04544/}
+#'   \url{https://arxiv.org/abs/1507.04544/}

man-roxygen/reference-stan-manual.R

@@ -1,2 +1,2 @@
-#' @references Stan Development Team. (2016). \emph{Stan Modeling Language Users
-#' Guide and Reference Manual.} \url{http://mc-stan.org/documentation/}
+#' @references Stan Development Team. \emph{Stan Modeling Language Users
+#' Guide and Reference Manual.} \url{https://mc-stan.org/users/documentation/}