Error in R code

[haruosuz]

I have got the following Error messages:

> ddF <- dada(derepFs[1:40], err=NULL, selfConsist=TRUE)
Error in dada(derepFs[1:40], err = NULL, selfConsist = TRUE) : 
  The derep argument must be a derep-class object, list of derep-class objects, or a character vector of fastq filenames.

Enclosed are updated R code and log file.
Rcode.txt
log.txt

[spholmes]

It seems there is a problem with the filenames as they all have dots in front of them which is not expected, and the filenames in the object derepFs are wrong. You might try and run through the shorter up to date current tutorial here to see if it works on these other files: https://benjjneb.github.io/dada2/tutorial.html

…

On Fri, Dec 27, 2019 at 8:11 AM Haruo Suzuki ***@***.***> wrote: I have got the following Error messages: ddF <- dada(derepFs[1:40], err=NULL, selfConsist=TRUE) Error in dada(derepFs[1:40], err = NULL, selfConsist = TRUE) : The derep argument must be a derep-class object, list of derep-class objects, or a character vector of fastq filenames. Enclosed is my log file. log.txt <https://github.com/spholmes/F1000_workflow/files/4005732/log.txt> — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#36?email_source=notifications&email_token=AAJFZPMV3U7DOHJFFH32OOTQ2YSJTA5CNFSM4J76MWW2YY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4IC4KCYA>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAJFZPIVCS5HBBRAEDVURATQ2YSJTANCNFSM4J76MWWQ> .

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