Transcription factor regulatory network analysis for other species

[jianghao0799]

What files should be input for Transcription factor regulatory network analysis

I want to utilize hdWGCNA to study Transcription factor regulatory network in plants. I have prepared the motif files and other necessary documents (like pyscenic). To be honest, I have already completed the pyscenic analysis.
What format should I prepare the files for hdWGCNA Transcription factor regulatory network analysis?

[smorabit]

Hi,

At this time, I have not done TF regulatory network analysis on any species aside from human and mouse, as these are the species that I personally work on. I don't have any code or tutorials etc for other species, so I am not exactly sure what to recommend. I would like to add this in the future as a new tutorial but right now I do not have a lot of extra time to work on this due to summer holidays etc.

[jianghao0799]

Thanks for your reply, I look forward to your new tutorial.