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@mikix mikix commented Oct 22, 2025

Adds irae__nlp_donor_* tasks, which check for donor characteristics.

The old irae__nlp_* task names remain, but now only check for longitudinal characteristics (i.e. non-donor-characteristic ones).

Checklist

  • Consider if documentation (like in docs/) needs to be updated
  • Consider if tests should be added

Adds irae__nlp_donor_* tasks, which check for donor characteristics.

The old irae__nlp_* task names remain, but now only check for
longitudinal characteristics (i.e. non-donor-characteristic ones).
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☂️ Python Coverage

current status: ✅

Overall Coverage

Lines Covered Coverage Threshold Status
4570 4528 99% 98% 🟢

New Files

No new covered files...

Modified Files

File Coverage Status
cumulus_etl/etl/studies/irae/init.py 100% 🟢
cumulus_etl/etl/studies/irae/irae_tasks.py 100% 🟢
cumulus_etl/etl/tasks/nlp_task.py 100% 🟢
cumulus_etl/etl/tasks/task_factory.py 100% 🟢
cumulus_etl/nlp/init.py 100% 🟢
TOTAL 100% 🟢

updated for commit: 0e613c8 by action🐍


class SpanAugmentedMention(BaseModel):
has_mention: bool | None # True, False, or None
has_mention: bool # True, False
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There are also some light model changes here, grabbed from Dylan's latest.

@mikix mikix marked this pull request as ready for review October 22, 2025 13:59
@mikix mikix merged commit bd62e8a into main Oct 22, 2025
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@mikix mikix deleted the mikix/irae-split branch October 22, 2025 14:45
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2 participants