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simonbesnard1simonbesnard1
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fix ci/cd for github
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‎.github/workflows/ci-additional.yaml‎

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name: CI Additional
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on:
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push:
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branches:
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- "main"
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pull_request:
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branches:
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- "main"
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workflow_dispatch: # allows you to trigger manually
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concurrency:
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group: ${{ github.workflow }}-${{ github.ref }}
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cancel-in-progress: true
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env:
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FORCE_COLOR: 3
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jobs:
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detect-ci-trigger:
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name: detect ci trigger
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runs-on: ubuntu-latest
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if: |
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github.repository == 'gedidb'
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&& (github.event_name == 'push' || github.event_name == 'pull_request')
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outputs:
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triggered: ${{ steps.detect-trigger.outputs.trigger-found }}
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 2
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- uses: gedidb-contrib/ci-trigger@v1
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id: detect-trigger
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with:
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keyword: "[skip-ci]"
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doctest:
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name: Doctests
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runs-on: "ubuntu-latest"
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needs: detect-ci-trigger
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if: needs.detect-ci-trigger.outputs.triggered == 'false'
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defaults:
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run:
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shell: bash -l {0}
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env:
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CONDA_ENV_FILE: ci/requirements/environment.yml
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PYTHON_VERSION: "3.12"
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0 # Fetch all history for all branches and tags.
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- name: set environment variables
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run: |
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echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV
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- name: Setup micromamba
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uses: mamba-org/setup-micromamba@v2
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with:
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environment-file: ${{env.CONDA_ENV_FILE}}
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environment-name: gedidb-tests
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create-args: >-
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python=${{env.PYTHON_VERSION}}
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cache-environment: true
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cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
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- name: Install gedidb
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run: |
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python -m pip install --no-deps -e .
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- name: Version info
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run: |
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python gedidb/utils/print_versions.py
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- name: Run doctests
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run: |
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# Raise an error if there are warnings in the doctests, with `-Werror`.
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# This is a trial; if it presents an problem, feel free to remove.
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# See https://github.com/simonbesnard1/gedidb/issues for more info.
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#
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# If dependencies emit warnings we can't do anything about, add ignores to
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# `gedidb/tests/__init__.py`.
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python -m pytest --doctest-modules gedidb --ignore gedidb/tests -Werror
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mypy:
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name: Mypy
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runs-on: "ubuntu-latest"
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needs: detect-ci-trigger
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defaults:
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run:
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shell: bash -l {0}
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env:
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CONDA_ENV_FILE: ci/requirements/environment.yml
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PYTHON_VERSION: "3.12"
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0 # Fetch all history for all branches and tags.
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- name: set environment variables
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run: |
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echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV
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- name: Setup micromamba
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uses: mamba-org/setup-micromamba@v2
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with:
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environment-file: ${{env.CONDA_ENV_FILE}}
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environment-name: gedidb-tests
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create-args: >-
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python=${{env.PYTHON_VERSION}}
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cache-environment: true
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cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
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- name: Install gedidb
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run: |
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python -m pip install --no-deps -e .
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- name: Version info
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run: |
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python gedidb/utils/print_versions.py
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- name: Install mypy
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run: |
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python -m pip install "mypy==1.15" --force-reinstall
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- name: Run mypy
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run: |
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python -m mypy --install-types --non-interactive --cobertura-xml-report mypy_report
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- name: Upload mypy coverage to Codecov
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uses: codecov/codecov-action@v5.3.1
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with:
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file: mypy_report/cobertura.xml
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flags: mypy
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env_vars: PYTHON_VERSION
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name: codecov-umbrella
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fail_ci_if_error: false
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mypy-min:
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name: Mypy 3.10
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runs-on: "ubuntu-latest"
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needs: detect-ci-trigger
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defaults:
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run:
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shell: bash -l {0}
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env:
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CONDA_ENV_FILE: ci/requirements/environment.yml
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PYTHON_VERSION: "3.10"
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0 # Fetch all history for all branches and tags.
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- name: set environment variables
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run: |
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echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV
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- name: Setup micromamba
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uses: mamba-org/setup-micromamba@v2
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with:
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environment-file: ${{env.CONDA_ENV_FILE}}
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environment-name: gedidb-tests
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create-args: >-
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python=${{env.PYTHON_VERSION}}
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cache-environment: true
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cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
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- name: Install gedidb
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run: |
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python -m pip install --no-deps -e .
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- name: Version info
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run: |
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python gedidb/utils/print_versions.py
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- name: Install mypy
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run: |
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python -m pip install "mypy==1.15" --force-reinstall
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- name: Run mypy
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run: |
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python -m mypy --install-types --non-interactive --cobertura-xml-report mypy_report
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- name: Upload mypy coverage to Codecov
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uses: codecov/codecov-action@v5.3.1
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with:
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file: mypy_report/cobertura.xml
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flags: mypy-min
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env_vars: PYTHON_VERSION
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name: codecov-umbrella
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fail_ci_if_error: false
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pyright:
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name: Pyright
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runs-on: "ubuntu-latest"
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needs: detect-ci-trigger
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if: |
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always()
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&& (
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contains( github.event.pull_request.labels.*.name, 'run-pyright')
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)
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defaults:
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run:
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shell: bash -l {0}
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env:
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CONDA_ENV_FILE: ci/requirements/environment.yml
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PYTHON_VERSION: "3.12"
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0 # Fetch all history for all branches and tags.
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- name: set environment variables
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run: |
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echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV
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- name: Setup micromamba
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uses: mamba-org/setup-micromamba@v2
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with:
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environment-file: ${{env.CONDA_ENV_FILE}}
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environment-name: gedidb-tests
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create-args: >-
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python=${{env.PYTHON_VERSION}}
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cache-environment: true
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cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
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- name: Install gedidb
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run: |
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python -m pip install --no-deps -e .
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- name: Version info
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run: |
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python gedidb/utils/print_versions.py
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- name: Install pyright
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run: |
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python -m pip install pyright --force-reinstall
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- name: Run pyright
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run: |
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python -m pyright gedidb/
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- name: Upload pyright coverage to Codecov
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uses: codecov/codecov-action@v5.3.1
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with:
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file: pyright_report/cobertura.xml
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flags: pyright
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env_vars: PYTHON_VERSION
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name: codecov-umbrella
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fail_ci_if_error: false
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pyright39:
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name: Pyright 3.10
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runs-on: "ubuntu-latest"
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needs: detect-ci-trigger
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if: |
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always()
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&& (
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contains( github.event.pull_request.labels.*.name, 'run-pyright')
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)
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defaults:
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run:
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shell: bash -l {0}
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env:
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CONDA_ENV_FILE: ci/requirements/environment.yml
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PYTHON_VERSION: "3.10"
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0 # Fetch all history for all branches and tags.
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- name: set environment variables
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run: |
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echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV
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- name: Setup micromamba
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uses: mamba-org/setup-micromamba@v2
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with:
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environment-file: ${{env.CONDA_ENV_FILE}}
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environment-name: gedidb-tests
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create-args: >-
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python=${{env.PYTHON_VERSION}}
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cache-environment: true
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cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{env.PYTHON_VERSION}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}"
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- name: Install gedidb
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run: |
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python -m pip install --no-deps -e .
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- name: Version info
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run: |
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python gedidb/utils/print_versions.py
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- name: Install pyright
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run: |
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python -m pip install pyright --force-reinstall
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- name: Run pyright
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run: |
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python -m pyright gedidb/
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- name: Upload pyright coverage to Codecov
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uses: codecov/codecov-action@v5.3.1
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with:
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file: pyright_report/cobertura.xml
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flags: pyright39
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env_vars: PYTHON_VERSION
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name: codecov-umbrella
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fail_ci_if_error: false

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