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chore: Migrate from diana-hep GitHub org to scikit-hep (#643)
* Replace all instances of diana-hep with scikit-hep
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‎.github/PULL_REQUEST_TEMPLATE.md

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# Description
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Please first read [CONTRIBUTING.md](https://github.com/diana-hep/pyhf/tree/master/CONTRIBUTING.md).
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Please first read [CONTRIBUTING.md](https://github.com/scikit-hep/pyhf/tree/master/CONTRIBUTING.md).
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Please describe the purpose of this pull request in some detail. Reference and link to any relevant issues or pull requests.
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‎.github/PULL_REQUEST_TEMPLATE/Bug-Fix.md

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# Pull Request Description
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Please first read [CONTRIBUTING.md](https://github.com/diana-hep/pyhf/tree/master/CONTRIBUTING.md).
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Please first read [CONTRIBUTING.md](https://github.com/scikit-hep/pyhf/tree/master/CONTRIBUTING.md).
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Please describe the purpose of this pull request in some detail and what bug it fixes. Reference and link to any relevant issues or pull requests (such as the issue in which this bug was first discussed).
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‎.github/PULL_REQUEST_TEMPLATE/Feature.md

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# Pull Request Description
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Please first read [CONTRIBUTING.md](https://github.com/diana-hep/pyhf/tree/master/CONTRIBUTING.md).
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Please first read [CONTRIBUTING.md](https://github.com/scikit-hep/pyhf/tree/master/CONTRIBUTING.md).
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Please describe the purpose of this pull request in some detail and what the specific feature being added will do. Reference and link to any relevant issues or pull requests (such as the issue in which this feature was first suggested).
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‎.github/workflows/merged.yml

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- name: Trigger Binder build
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run: |
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# Use Binder build API to trigger repo2docker to build image on GKE and OVH Binder Federation clusters
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bash binder/trigger_binder.sh https://gke.mybinder.org/build/gh/diana-hep/pyhf/master
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bash binder/trigger_binder.sh https://ovh.mybinder.org/build/gh/diana-hep/pyhf/master
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bash binder/trigger_binder.sh https://gke.mybinder.org/build/gh/scikit-hep/pyhf/master
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bash binder/trigger_binder.sh https://ovh.mybinder.org/build/gh/scikit-hep/pyhf/master

‎.github/workflows/publish-package.yml

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jobs:
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build-and-publish:
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name: Build and publish Python 🐍 distributions 📦 to PyPI and TestPyPI
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name: Build and publish Python distro to (Test)PyPI
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@master
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python -m pep517.build --source --binary --out-dir dist/ .
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- name: Publish distribution 📦 to Test PyPI
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# every PR will trigger a push event on master, so check the push event is actually coming from master
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if: github.event_name == 'push' && github.ref == 'refs/heads/master' && github.repository == 'diana-hep/pyhf'
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if: github.event_name == 'push' && github.ref == 'refs/heads/master' && github.repository == 'scikit-hep/pyhf'
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uses: pypa/gh-action-pypi-publish@v1.0.0a0
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with:
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password: ${{ secrets.test_pypi_password }}
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repository_url: https://test.pypi.org/legacy/
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- name: Publish distribution 📦 to PyPI
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if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') && github.repository == 'diana-hep/pyhf'
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if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') && github.repository == 'scikit-hep/pyhf'
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uses: pypa/gh-action-pypi-publish@v1.0.0a0
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with:
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‎CONTRIBUTING.md

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## Bug Reports
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If you have found a bug please report it by filling out the [bug report template](https://github.com/diana-hep/pyhf/issues/new?template=Bug-Report.md&labels=bug&title=Bug+Report+:+Title+Here).
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If you have found a bug please report it by filling out the [bug report template](https://github.com/scikit-hep/pyhf/issues/new?template=Bug-Report.md&labels=bug&title=Bug+Report+:+Title+Here).
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## Installing the development environment
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We recommend first reading the "[Developing](https://diana-hep.org/pyhf/development.html)" page on the pyhf website and the coming back here.
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We recommend first reading the "[Developing](https://scikit-hep.org/pyhf/development.html)" page on the pyhf website and the coming back here.
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You can install the development environment (which includes a number of extra) libraries and all others needed to run the tests via `pip`:
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‎README.md

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[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.1169739.svg)](https://doi.org/10.5281/zenodo.1169739)
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[![Travis Build Status](https://travis-ci.org/diana-hep/pyhf.svg?branch=master)](https://travis-ci.org/diana-hep/pyhf)
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[![GitHub Actions Status: CI](https://github.com/diana-hep/pyhf/workflows/CI/CD/badge.svg)](https://github.com/diana-hep/pyhf/actions?query=workflow%3ACI%2FCD+branch%3Amaster)
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[![GitHub Actions Status: Publish](https://github.com/diana-hep/pyhf/workflows/publish%20distributions/badge.svg)](https://github.com/diana-hep/pyhf/actions?query=workflow%3A%22publish+distributions%22+branch%3Amaster)
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[![Travis Build Status](https://travis-ci.org/scikit-hep/pyhf.svg?branch=master)](https://travis-ci.org/scikit-hep/pyhf)
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[![GitHub Actions Status: CI](https://github.com/scikit-hep/pyhf/workflows/CI/CD/badge.svg)](https://github.com/scikit-hep/pyhf/actions?query=workflow%3ACI%2FCD+branch%3Amaster)
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[![GitHub Actions Status: Publish](https://github.com/scikit-hep/pyhf/workflows/publish%20distributions/badge.svg)](https://github.com/scikit-hep/pyhf/actions?query=workflow%3A%22publish+distributions%22+branch%3Amaster)
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[![Docker Automated](https://img.shields.io/docker/automated/pyhf/pyhf.svg)](https://hub.docker.com/r/pyhf/pyhf/)
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[![Code Coverage](https://codecov.io/gh/diana-hep/pyhf/graph/badge.svg?branch=master)](https://codecov.io/gh/diana-hep/pyhf?branch=master)
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[![Language grade: Python](https://img.shields.io/lgtm/grade/python/g/diana-hep/pyhf.svg?logo=lgtm&logoWidth=18)](https://lgtm.com/projects/g/diana-hep/pyhf/latest/files/)
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[![CodeFactor](https://www.codefactor.io/repository/github/diana-hep/pyhf/badge)](https://www.codefactor.io/repository/github/diana-hep/pyhf)
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[![Code Coverage](https://codecov.io/gh/scikit-hep/pyhf/graph/badge.svg?branch=master)](https://codecov.io/gh/scikit-hep/pyhf?branch=master)
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[![Language grade: Python](https://img.shields.io/lgtm/grade/python/g/scikit-hep/pyhf.svg?logo=lgtm&logoWidth=18)](https://lgtm.com/projects/g/scikit-hep/pyhf/latest/files/)
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[![CodeFactor](https://www.codefactor.io/repository/github/scikit-hep/pyhf/badge)](https://www.codefactor.io/repository/github/scikit-hep/pyhf)
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[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/ambv/black)
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[![Docs](https://img.shields.io/badge/docs-master-blue.svg)](https://diana-hep.github.io/pyhf)
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[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/diana-hep/pyhf/master?filepath=docs%2Fexamples%2Fnotebooks%2Fbinderexample%2FStatisticalAnalysis.ipynb)
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[![Docs](https://img.shields.io/badge/docs-master-blue.svg)](https://scikit-hep.github.io/pyhf)
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[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/scikit-hep/pyhf/master?filepath=docs%2Fexamples%2Fnotebooks%2Fbinderexample%2FStatisticalAnalysis.ipynb)
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[![PyPI version](https://badge.fury.io/py/pyhf.svg)](https://badge.fury.io/py/pyhf)
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[![Supported Python versionss](https://img.shields.io/pypi/pyversions/pyhf.svg)](https://pypi.org/project/pyhf/)
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nobs = 55, b = 50, db = 7, nom_sig = 10.
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```
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<img src="https://raw.githubusercontent.com/diana-hep/pyhf/master/docs/_static/img/manual_1bin_55_50_7.png" alt="manual" width="500"/>
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<img src="https://raw.githubusercontent.com/diana-hep/pyhf/master/docs/_static/img/hfh_1bin_55_50_7.png" alt="manual" width="500"/>
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<img src="https://raw.githubusercontent.com/scikit-hep/pyhf/master/docs/_static/img/manual_1bin_55_50_7.png" alt="manual" width="500"/>
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<img src="https://raw.githubusercontent.com/scikit-hep/pyhf/master/docs/_static/img/hfh_1bin_55_50_7.png" alt="manual" width="500"/>
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## A two bin example
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<img src="https://raw.githubusercontent.com/diana-hep/pyhf/master/docs/_static/img/manual_2_bin_100.0_145.0_100.0_150.0_15.0_20.0_30.0_45.0.png" alt="manual" width="500"/>
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<img src="https://raw.githubusercontent.com/diana-hep/pyhf/master/docs/_static/img/hfh_2_bin_100.0_145.0_100.0_150.0_15.0_20.0_30.0_45.0.png" alt="manual" width="500"/>
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<img src="https://raw.githubusercontent.com/scikit-hep/pyhf/master/docs/_static/img/manual_2_bin_100.0_145.0_100.0_150.0_15.0_20.0_30.0_45.0.png" alt="manual" width="500"/>
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<img src="https://raw.githubusercontent.com/scikit-hep/pyhf/master/docs/_static/img/hfh_2_bin_100.0_145.0_100.0_150.0_15.0_20.0_30.0_45.0.png" alt="manual" width="500"/>
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## Installation
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## Authors
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Please check the [contribution statistics for a list of contributors](https://github.com/diana-hep/pyhf/graphs/contributors)
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Please check the [contribution statistics for a list of contributors](https://github.com/scikit-hep/pyhf/graphs/contributors)

‎docs/_templates/modifierclass.rst

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:github_url: https://github.com/diana-hep/pyhf/blob/master/{{module | replace(".", "/") }}
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:github_url: https://github.com/scikit-hep/pyhf/blob/master/{{module | replace(".", "/") }}
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{{ name | escape | underline}}
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‎docs/bib/docs.bib

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url = {https://scikit-hep.org/pyhf/schemas/1.0.0/workspace.json},
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note = {Accessed: 2019-06-20}
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@misc{schema_model,
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title = {Model Schema},
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url = {https://scikit-hep.org/pyhf/schemas/1.0.0/model.json},
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title = {HistFactory Definitions Schema},
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‎docs/conf.py

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‎docs/development.rst

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‎docs/examples.rst

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.. |Binder| image:: https://mybinder.org/badge_logo.svg
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:target: https://mybinder.org/v2/gh/scikit-hep/pyhf/master?filepath=docs%2Fexamples%2Fnotebooks%2Fbinderexample%2FStatisticalAnalysis.ipynb
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‎docs/examples/notebooks/binderexample/StatisticalAnalysis.ipynb

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"\n",
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"## The Demo\n",
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"The input data for the statistical analysis was built generated using the containerized workflow engine [yadage](https://github.com/diana-hep/yadage) (see demo from KubeCon 2018 [[youtube](https://github.com/diana-hep/yadage)]). Similarly to Binder this utilizes modern container technology for reproducible science. Below you see the execution graph leading up to the model input data at the bottom."
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"The input data for the statistical analysis was built generated using the containerized workflow engine [yadage](https://github.com/scikit-hep/yadage) (see demo from KubeCon 2018 [[youtube](https://github.com/scikit-hep/yadage)]). Similarly to Binder this utilizes modern container technology for reproducible science. Below you see the execution graph leading up to the model input data at the bottom."
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‎docs/faq.rst

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Not at the moment. `Pull Requests <https://github.com/scikit-hep/pyhf/compare>`__ are welcome.
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‎docs/governance/ROADMAP.md

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# pyhf 2019 into 2020 Roadmap (Issue [#561](https://github.com/diana-hep/pyhf/issues/561))
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# pyhf 2019 into 2020 Roadmap (Issue [#561](https://github.com/scikit-hep/pyhf/issues/561))
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- [ ] [Greatly revise and expand examples](https://github.com/diana-hep/pyhf/issues?q=is%3Aopen+is%3Aissue+label%3Adocs) (Issues #168, #202, #212, #325, #342, #349, #367) [2019-Q3 → 2019-Q4]
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- [ ] [Greatly revise and expand examples](https://github.com/scikit-hep/pyhf/issues?q=is%3Aopen+is%3Aissue+label%3Adocs) (Issues #168, #202, #212, #325, #342, #349, #367) [2019-Q3 → 2019-Q4]
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‎docs/index.rst

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.. raw:: html
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<a class="github-fork-ribbon right-top fixed" href="https://github.com/diana-hep/pyhf/fork" data-ribbon="Fork me on GitHub" title="Fork me on GitHub">Fork me on GitHub</a>
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<a class="github-fork-ribbon right-top fixed" href="https://github.com/scikit-hep/pyhf/fork" data-ribbon="Fork me on GitHub" title="Fork me on GitHub">Fork me on GitHub</a>
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‎docs/installation.rst

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Install latest development version from `GitHub <https://github.com/scikit-hep/pyhf>`__...
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‎docs/likelihood.rst

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‎setup.py

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url='https://github.com/scikit-hep/pyhf',
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‎src/pyhf/schemas/1.0.0/defs.json

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‎src/pyhf/schemas/1.0.0/measurement.json

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‎src/pyhf/schemas/1.0.0/model.json

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"$id": "https://scikit-hep.org/pyhf/schemas/1.0.0/model.json",
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"type": "object",
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"properties": {
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"channels": { "type": "array", "items": {"$ref": "defs.json#/definitions/channel"} },

‎src/pyhf/schemas/1.0.0/workspace.json

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@@ -1,6 +1,6 @@
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{
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"$schema": "http://json-schema.org/draft-06/schema#",
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"$id": "https://diana-hep.org/pyhf/schemas/1.0.0/workspace.json",
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"$id": "https://scikit-hep.org/pyhf/schemas/1.0.0/workspace.json",
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"type": "object",
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"properties": {
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"channels": { "type": "array", "items": {"$ref": "defs.json#/definitions/channel"} },

‎src/pyhf/utils.py

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@@ -9,7 +9,7 @@
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from . import get_backend
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SCHEMA_CACHE = {}
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SCHEMA_BASE = "https://diana-hep.org/pyhf/schemas/"
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SCHEMA_BASE = "https://scikit-hep.org/pyhf/schemas/"
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SCHEMA_VERSION = '1.0.0'
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@@ -103,7 +103,7 @@ def qmu(mu, data, pdf, init_pars, par_bounds):
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par_bounds(Tensor): The bounds on the paramter values
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.. |pyhf.pdf.Model| replace:: ``pyhf.pdf.Model``
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.. _pyhf.pdf.Model: https://diana-hep.org/pyhf/_generated/pyhf.pdf.Model.html
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.. _pyhf.pdf.Model: https://scikit-hep.org/pyhf/_generated/pyhf.pdf.Model.html
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Returns:
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Float: The calculated test statistic, :math:`q_{\mu}`
@@ -216,7 +216,7 @@ def hypotest(
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qtilde (Bool): When ``True`` perform the calculation using the alternative test statistic, :math:`\tilde{q}`, as defined in Equation (62) of `arXiv:1007.1727`_
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.. |pyhf.pdf.Model| replace:: ``pyhf.pdf.Model``
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.. _pyhf.pdf.Model: https://diana-hep.org/pyhf/_generated/pyhf.pdf.Model.html
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.. _pyhf.pdf.Model: https://scikit-hep.org/pyhf/_generated/pyhf.pdf.Model.html
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Keyword Args:
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return_tail_probs (bool): Bool for returning :math:`\textrm{CL}_{s+b}` and :math:`\textrm{CL}_{b}`

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