Update from scikit-bio/scikit-bio@9fbc82f

Author: qiyunzhu

docs/0.6.3/.buildinfo

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+# Sphinx build info version 1
+# This file records the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: 44ee40cc937a3df2122bd71afef2a192
+tags: 645f666f9bcd5a90fca523b33c5a78b7

docs/0.6.3/_images/diversity-1.png

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+.. meta::
+   :description: Computing and manipulating biological sequence alignments.
+
+.. automodule:: skbio.alignment

docs/0.6.3/_images/diversity-2_00.png

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+.. meta::
+   :description: Analyzing biodiversity of communities -- groups of organisms living in the same area.
+
+.. automodule:: skbio.diversity

docs/0.6.3/_images/diversity-2_01.png

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+.. meta::
+   :description: Storing and working with embeddings of biological objects for machine learning.
+
+.. automodule:: skbio.embedding

docs/0.6.3/_images/diversity-3_00.png

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+:orphan:
+
+skbio.alignment.AlignPath.from_bits
+===================================
+
+.. currentmodule:: skbio.alignment
+
+.. automethod:: AlignPath.from_bits

docs/0.6.3/_images/diversity-3_01.png

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+:orphan:
+
+skbio.alignment.AlignPath.from_coordinates
+==========================================
+
+.. currentmodule:: skbio.alignment
+
+.. automethod:: AlignPath.from_coordinates

docs/0.6.3/_images/diversity-3_02.png

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+:orphan:
+
+skbio.alignment.AlignPath.from_indices
+======================================
+
+.. currentmodule:: skbio.alignment
+
+.. automethod:: AlignPath.from_indices

docs/0.6.3/_images/skbio-stats-distance-DissimilarityMatrix-plot-1.png

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+:orphan:
+
+skbio.alignment.AlignPath.from_tabular
+======================================
+
+.. currentmodule:: skbio.alignment
+
+.. automethod:: AlignPath.from_tabular

docs/0.6.3/_images/skbio-stats-ordination-OrdinationResults-plot-1.png

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+
+skbio.alignment.AlignPath
+=========================
+
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+.. currentmodule:: skbio.alignment
+
+.. autoclass:: AlignPath
+
+
+
+
+   
+   
+   .. rubric:: Attributes
+
+   .. autosummary::
+   
+      ~AlignPath.lengths
+      ~AlignPath.shape
+      ~AlignPath.starts
+      ~AlignPath.states
+   
+
+   
+   
+
+   
+   
+   .. rubric:: Methods
+
+   .. autosummary::
+      :toctree:
+   
+      ~AlignPath.from_bits
+   
+      ~AlignPath.from_coordinates
+   
+      ~AlignPath.from_indices
+   
+      ~AlignPath.from_tabular
+   
+      ~AlignPath.to_bits
+   
+      ~AlignPath.to_coordinates
+   
+      ~AlignPath.to_indices
+   
+   
+
+   
+   
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+   
+   
+   .. rubric:: Special methods
+
+   .. autosummary::
+   
+      ~AlignPath.__str__
+   
+
+   
+   .. rubric:: Special methods (inherited)
+
+   .. autoinherit::
+   
+      ~AlignPath.__eq__
+      ~AlignPath.__ge__
+      ~AlignPath.__getstate__
+      ~AlignPath.__gt__
+      ~AlignPath.__hash__
+      ~AlignPath.__le__
+      ~AlignPath.__lt__
+      ~AlignPath.__ne__
+   
+   
+
+
+
+
+   
+   .. rubric:: Details
+
+   
+   
+   .. autoattribute:: AlignPath.lengths
+   
+   
+   
+   .. autoattribute:: AlignPath.shape
+   
+   
+   
+   .. autoattribute:: AlignPath.starts
+   
+   
+   
+   .. autoattribute:: AlignPath.states
+   
+   
+
+   
+   
+   .. automethod:: AlignPath.__str__
+   
+   
+   

docs/0.6.3/_sources/alignment.rst.txt

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+:orphan:
+
+skbio.alignment.AlignPath.to_bits
+=================================
+
+.. currentmodule:: skbio.alignment
+
+.. automethod:: AlignPath.to_bits

docs/0.6.3/_sources/diversity.rst.txt

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+:orphan:
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+skbio.alignment.AlignPath.to_coordinates
+========================================
+
+.. currentmodule:: skbio.alignment
+
+.. automethod:: AlignPath.to_coordinates

docs/0.6.3/_sources/embedding.rst.txt

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+:orphan:
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+skbio.alignment.AlignPath.to_indices
+====================================
+
+.. currentmodule:: skbio.alignment
+
+.. automethod:: AlignPath.to_indices

docs/0.6.3/_sources/generated/skbio.alignment.AlignPath.from_bits.rst.txt

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+:orphan:
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+skbio.alignment.AlignmentStructure.is_zero_based
+================================================
+
+.. currentmodule:: skbio.alignment
+
+.. automethod:: AlignmentStructure.is_zero_based