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docs/dev/_images/diversity-1.png

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docs/dev/diversity.html

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@@ -889,7 +889,7 @@ <h3>Specifying a diversity metric<a class="headerlink" href="#specifying-a-diver
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respectively. These functions return lists of alpha and beta diversity metrics
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that are implemented in scikit-bio. There may be additional metrics that can be
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passed as strings which won’t be listed here, such as those implemented in
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SciPy’s <a class="reference external" href="https://docs.scipy.org/doc/scipy/reference/generated/scipy.spatial.distance.pdist.html#scipy.spatial.distance.pdist" title="(in SciPy v1.16.0)"><code class="xref py py-func docutils literal notranslate"><span class="pre">pdist</span></code></a>.</p>
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SciPy’s <a class="reference external" href="https://docs.scipy.org/doc/scipy/reference/generated/scipy.spatial.distance.pdist.html#scipy.spatial.distance.pdist" title="(in SciPy v1.16.1)"><code class="xref py py-func docutils literal notranslate"><span class="pre">pdist</span></code></a>.</p>
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</section>
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</section>
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<section id="tutorial">

docs/dev/generated/skbio.diversity.beta.html

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<section id="beta-diversity-measures-skbio-diversity-beta">
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<span id="module-skbio.diversity.beta"></span><h1>Beta diversity measures (<a class="reference internal" href="#module-skbio.diversity.beta" title="skbio.diversity.beta"><code class="xref py py-mod docutils literal notranslate"><span class="pre">skbio.diversity.beta</span></code></a>)<a class="headerlink" href="#beta-diversity-measures-skbio-diversity-beta" title="Link to this heading">#</a></h1>
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<p>This package provides implementations of beta diversity measures for computing sample
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dissimilarity. Users should also explore SciPy’s <a class="reference external" href="https://docs.scipy.org/doc/scipy/reference/generated/scipy.spatial.distance.pdist.html#scipy.spatial.distance.pdist" title="(in SciPy v1.16.0)"><code class="xref py py-func docutils literal notranslate"><span class="pre">pdist</span></code></a>,
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dissimilarity. Users should also explore SciPy’s <a class="reference external" href="https://docs.scipy.org/doc/scipy/reference/generated/scipy.spatial.distance.pdist.html#scipy.spatial.distance.pdist" title="(in SciPy v1.16.1)"><code class="xref py py-func docutils literal notranslate"><span class="pre">pdist</span></code></a>,
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which provides implementations of additional beta diversity metrics with interfaces
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similar to those provided here, and can be directly used in the driver function
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<a class="reference internal" href="skbio.diversity.beta_diversity.html#skbio.diversity.beta_diversity" title="skbio.diversity.beta_diversity"><code class="xref py py-func docutils literal notranslate"><span class="pre">beta_diversity</span></code></a>.</p>

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