Skip to content

Commit 9eaf9ed

Browse files
qiyunzhuqiyunzhu
committed
1 parent ac0000e commit 9eaf9ed

File tree

8 files changed

+63
-52
lines changed

8 files changed

+63
-52
lines changed

‎_sources/index.rst.txt

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -43,7 +43,7 @@
4343

4444
.. hidden page title
4545
46-
.. title:: scikit-bio
46+
.. title:: scikit-bio: Bioinformatics in Python
4747

4848

4949
.. light/dark logo image
@@ -283,11 +283,11 @@
283283

284284
.. card::
285285

286-
New `DOE award <https://genomicscience.energy.gov/compbioawards2023/#Expanding>`_ for scikit-bio development in multi-omics and complex modeling.
286+
Thrilled with completion of `scikit-bio workshop <https://www.iscb.org/ismb2024/programme-schedule/tutorials#ip3>`_ at ISMB 2024. Materials are `publicly available <https://github.com/scikit-bio/scikit-bio-tutorials>`_.
287287

288288
.. card::
289289

290-
Upcoming scikit-bio `workshop at ISMB 2024 <https://www.iscb.org/ismb2024/programme-schedule/tutorials#ip3>`_, July 12, Montreal, Canada. Welcome to join!
290+
New `DOE award <https://genomicscience.energy.gov/compbioawards2023/#Expanding>`_ for scikit-bio development in multi-omics and complex modeling.
291291

292292
.. card::
293293

‎_sources/learn.rst.txt

Lines changed: 18 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -1,30 +1,39 @@
11
Learn scikit-bio
22
================
33

4-
Workshops
4+
5+
Tutorials
56
---------
67

7-
:bdg-info:`New` Upcoming scikit-bio workshop at `ISMB 2024 <https://www.iscb.org/ismb2024/home/>`_! The tutorial will introduce the revitalized scikit-bio, with a focus on multi-omic data integration for microbiome research. Tutorial materials will be shared via a public GitHub repository. Welcome to join us!
8+
:bdg-info:`New` `scikit-bio tutorials <https://github.com/scikit-bio/scikit-bio-tutorials>`_ given at ISMB 2024 are now publicly available. From basic sequence operations to protein language models. Code, instructions and test datasets included.
89

9-
- **When**: 9:00 - 18:00 EDT, July 12, 2024 | **Where**: Montreal, Canada
10+
.. button-link:: https://github.com/scikit-bio/scikit-bio-tutorials
11+
:color: primary
12+
:shadow:
1013

11-
.. button-link:: https://www.iscb.org/ismb2024/programme-schedule/tutorials#ip3
14+
Tutorial repository
15+
16+
Also check out the classical `scikit-bio-cookbook <https://github.com/scikit-bio/scikit-bio-cookbook>`_: A series of Jupyter Notebooks containing executable "recipes" for bioinformatics workflows using scikit-bio.
17+
18+
.. button-link:: https://nbviewer.org/github/biocore/scikit-bio-cookbook/blob/main/Index.ipynb
1219
:color: primary
1320
:shadow:
1421

15-
ISMB 2024 tutorials
22+
Cookbook frontpage
1623

1724

18-
Cookbooks
25+
Workshops
1926
---------
2027

21-
`scikit-bio-cookbook <https://github.com/scikit-bio/scikit-bio-cookbook>`_: A series of Jupyter Notebooks containing executable "recipes" for bioinformatics workflows using scikit-bio. You can find the table of contents, installation instructions, and other information at:
28+
We are thrilled with the successful completion of our scikit-bio workshop at `ISMB 2024 <https://www.iscb.org/ismb2024/home/>`_! :fa:`beer-mug-empty` Huge thanks to everyone who attended and participated. It was great to connect with the bioinformatics community and explore the latest in the field. Stay tuned for more!
2229

23-
.. button-link:: https://nbviewer.org/github/biocore/scikit-bio-cookbook/blob/main/Index.ipynb
30+
- **When**: 9:00 - 18:00 EDT, July 12, 2024 | **Where**: Montreal, Canada
31+
32+
.. button-link:: https://www.iscb.org/ismb2024/programme-schedule/tutorials#ip3
2433
:color: primary
2534
:shadow:
2635

27-
Cookbook frontpage
36+
ISMB 2024 workshop
2837

2938

3039
Books

‎index.html

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -8,7 +8,7 @@
88
<meta charset="utf-8" />
99
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
1010

11-
<title>scikit-bio &#8212; scikit-bio</title>
11+
<title>scikit-bio: Bioinformatics in Python &#8212; scikit-bio</title>
1212

1313

1414

@@ -618,12 +618,12 @@
618618
</div>
619619
<div class="sd-card sd-sphinx-override sd-mb-3 sd-shadow-sm docutils">
620620
<div class="sd-card-body docutils">
621-
<p class="sd-card-text">New <a class="reference external" href="https://genomicscience.energy.gov/compbioawards2023/#Expanding">DOE award</a> for scikit-bio development in multi-omics and complex modeling.</p>
621+
<p class="sd-card-text">Thrilled with completion of <a class="reference external" href="https://www.iscb.org/ismb2024/programme-schedule/tutorials#ip3">scikit-bio workshop</a> at ISMB 2024. Materials are <a class="reference external" href="https://github.com/scikit-bio/scikit-bio-tutorials">publicly available</a>.</p>
622622
</div>
623623
</div>
624624
<div class="sd-card sd-sphinx-override sd-mb-3 sd-shadow-sm docutils">
625625
<div class="sd-card-body docutils">
626-
<p class="sd-card-text">Upcoming scikit-bio <a class="reference external" href="https://www.iscb.org/ismb2024/programme-schedule/tutorials#ip3">workshop at ISMB 2024</a>, July 12, Montreal, Canada. Welcome to join!</p>
626+
<p class="sd-card-text">New <a class="reference external" href="https://genomicscience.energy.gov/compbioawards2023/#Expanding">DOE award</a> for scikit-bio development in multi-omics and complex modeling.</p>
627627
</div>
628628
</div>
629629
<div class="sd-card sd-sphinx-override sd-mb-3 sd-shadow-sm docutils">

‎install.html

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -64,7 +64,7 @@
6464
<link rel="index" title="Index" href="genindex.html" />
6565
<link rel="search" title="Search" href="search.html" />
6666
<link rel="next" title="Learn scikit-bio" href="learn.html" />
67-
<link rel="prev" title="scikit-bio" href="index.html" />
67+
<link rel="prev" title="scikit-bio: Bioinformatics in Python" href="index.html" />
6868
<meta name="viewport" content="width=device-width, initial-scale=1"/>
6969
<meta name="docsearch:language" content="en"/>
7070
</head>

‎learn.html

Lines changed: 10 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -446,18 +446,20 @@
446446

447447
<section id="learn-scikit-bio">
448448
<h1>Learn scikit-bio<a class="headerlink" href="#learn-scikit-bio" title="Link to this heading">#</a></h1>
449+
<section id="tutorials">
450+
<h2>Tutorials<a class="headerlink" href="#tutorials" title="Link to this heading">#</a></h2>
451+
<p><span class="sd-sphinx-override sd-badge sd-bg-info sd-bg-text-info">New</span> <a class="reference external" href="https://github.com/scikit-bio/scikit-bio-tutorials">scikit-bio tutorials</a> given at ISMB 2024 are now publicly available. From basic sequence operations to protein language models. Code, instructions and test datasets included.</p>
452+
<p><a class="sd-sphinx-override sd-btn sd-text-wrap sd-btn-primary sd-shadow-sm reference external" href="https://github.com/scikit-bio/scikit-bio-tutorials"><span>Tutorial repository</span></a></p>
453+
<p>Also check out the classical <a class="reference external" href="https://github.com/scikit-bio/scikit-bio-cookbook">scikit-bio-cookbook</a>: A series of Jupyter Notebooks containing executable “recipes” for bioinformatics workflows using scikit-bio.</p>
454+
<p><a class="sd-sphinx-override sd-btn sd-text-wrap sd-btn-primary sd-shadow-sm reference external" href="https://nbviewer.org/github/biocore/scikit-bio-cookbook/blob/main/Index.ipynb"><span>Cookbook frontpage</span></a></p>
455+
</section>
449456
<section id="workshops">
450457
<h2>Workshops<a class="headerlink" href="#workshops" title="Link to this heading">#</a></h2>
451-
<p><span class="sd-sphinx-override sd-badge sd-bg-info sd-bg-text-info">New</span> Upcoming scikit-bio workshop at <a class="reference external" href="https://www.iscb.org/ismb2024/home/">ISMB 2024</a>! The tutorial will introduce the revitalized scikit-bio, with a focus on multi-omic data integration for microbiome research. Tutorial materials will be shared via a public GitHub repository. Welcome to join us!</p>
458+
<p>We are thrilled with the successful completion of our scikit-bio workshop at <a class="reference external" href="https://www.iscb.org/ismb2024/home/">ISMB 2024</a>! <span class="fa fa-beer-mug-empty"></span> Huge thanks to everyone who attended and participated. It was great to connect with the bioinformatics community and explore the latest in the field. Stay tuned for more!</p>
452459
<ul class="simple">
453460
<li><p><strong>When</strong>: 9:00 - 18:00 EDT, July 12, 2024 | <strong>Where</strong>: Montreal, Canada</p></li>
454461
</ul>
455-
<p><a class="sd-sphinx-override sd-btn sd-text-wrap sd-btn-primary sd-shadow-sm reference external" href="https://www.iscb.org/ismb2024/programme-schedule/tutorials#ip3"><span>ISMB 2024 tutorials</span></a></p>
456-
</section>
457-
<section id="cookbooks">
458-
<h2>Cookbooks<a class="headerlink" href="#cookbooks" title="Link to this heading">#</a></h2>
459-
<p><a class="reference external" href="https://github.com/scikit-bio/scikit-bio-cookbook">scikit-bio-cookbook</a>: A series of Jupyter Notebooks containing executable “recipes” for bioinformatics workflows using scikit-bio. You can find the table of contents, installation instructions, and other information at:</p>
460-
<p><a class="sd-sphinx-override sd-btn sd-text-wrap sd-btn-primary sd-shadow-sm reference external" href="https://nbviewer.org/github/biocore/scikit-bio-cookbook/blob/main/Index.ipynb"><span>Cookbook frontpage</span></a></p>
462+
<p><a class="sd-sphinx-override sd-btn sd-text-wrap sd-btn-primary sd-shadow-sm reference external" href="https://www.iscb.org/ismb2024/programme-schedule/tutorials#ip3"><span>ISMB 2024 workshop</span></a></p>
461463
</section>
462464
<section id="books">
463465
<h2>Books<a class="headerlink" href="#books" title="Link to this heading">#</a></h2>
@@ -497,8 +499,8 @@ <h2>Videos<a class="headerlink" href="#videos" title="Link to this heading">#</a
497499
</div>
498500
<nav class="bd-toc-nav page-toc" aria-labelledby="pst-page-navigation-heading-2">
499501
<ul class="visible nav section-nav flex-column">
502+
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#tutorials">Tutorials</a></li>
500503
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#workshops">Workshops</a></li>
501-
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#cookbooks">Cookbooks</a></li>
502504
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#books">Books</a></li>
503505
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#videos">Videos</a></li>
504506
</ul>

‎objects.inv

21 Bytes
Binary file not shown.

‎searchindex.js

Lines changed: 1 addition & 1 deletion
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.

‎versions.json

Lines changed: 27 additions & 27 deletions
Original file line numberDiff line numberDiff line change
@@ -2,37 +2,37 @@
22
{
33
"name": "dev",
44
"version": "dev",
5-
"url": "https://scikit.bio/docs/dev/index.html"
5+
"url": "https://scikit.bio/docs/dev/"
66
},
77
{
88
"name": "latest",
99
"version": "0.6.2",
10-
"url": "https://scikit.bio/docs/latest/index.html",
10+
"url": "https://scikit.bio/docs/latest/",
1111
"preferred": true
1212
},
13-
{ "version": "0.6.2", "url": "https://scikit.bio/docs/0.6.2/index.html" },
14-
{ "version": "0.6.1", "url": "https://scikit.bio/docs/0.6.1/index.html" },
15-
{ "version": "0.6.0", "url": "https://scikit.bio/docs/0.6.0/index.html" },
16-
{ "version": "0.5.9", "url": "https://scikit.bio/docs/0.5.9/index.html" },
17-
{ "version": "0.5.8", "url": "https://scikit.bio/docs/0.5.8/index.html" },
18-
{ "version": "0.5.7", "url": "https://scikit.bio/docs/0.5.7/index.html" },
19-
{ "version": "0.5.6", "url": "https://scikit.bio/docs/0.5.6/index.html" },
20-
{ "version": "0.5.5", "url": "https://scikit.bio/docs/0.5.5/index.html" },
21-
{ "version": "0.5.4", "url": "https://scikit.bio/docs/0.5.4/index.html" },
22-
{ "version": "0.5.3", "url": "https://scikit.bio/docs/0.5.3/index.html" },
23-
{ "version": "0.5.2", "url": "https://scikit.bio/docs/0.5.2/index.html" },
24-
{ "version": "0.5.1", "url": "https://scikit.bio/docs/0.5.1/index.html" },
25-
{ "version": "0.5.0", "url": "https://scikit.bio/docs/0.5.0/index.html" },
26-
{ "version": "0.4.2", "url": "https://scikit.bio/docs/0.4.2/index.html" },
27-
{ "version": "0.4.1", "url": "https://scikit.bio/docs/0.4.1/index.html" },
28-
{ "version": "0.4.0", "url": "https://scikit.bio/docs/0.4.0/index.html" },
29-
{ "version": "0.4.0", "url": "https://scikit.bio/docs/0.4.0/index.html" },
30-
{ "version": "0.4.0", "url": "https://scikit.bio/docs/0.4.0/index.html" },
31-
{ "version": "0.2.3", "url": "https://scikit.bio/docs/0.2.3/index.html" },
32-
{ "version": "0.2.2", "url": "https://scikit.bio/docs/0.2.2/index.html" },
33-
{ "version": "0.2.1", "url": "https://scikit.bio/docs/0.2.1/index.html" },
34-
{ "version": "0.2.0", "url": "https://scikit.bio/docs/0.2.0/index.html" },
35-
{ "version": "0.1.4", "url": "https://scikit.bio/docs/0.1.4/index.html" },
36-
{ "version": "0.1.3", "url": "https://scikit.bio/docs/0.1.3/index.html" },
37-
{ "version": "0.1.1", "url": "https://scikit.bio/docs/0.1.1/index.html" }
13+
{ "version": "0.6.2", "url": "https://scikit.bio/docs/0.6.2/" },
14+
{ "version": "0.6.1", "url": "https://scikit.bio/docs/0.6.1/" },
15+
{ "version": "0.6.0", "url": "https://scikit.bio/docs/0.6.0/" },
16+
{ "version": "0.5.9", "url": "https://scikit.bio/docs/0.5.9/" },
17+
{ "version": "0.5.8", "url": "https://scikit.bio/docs/0.5.8/" },
18+
{ "version": "0.5.7", "url": "https://scikit.bio/docs/0.5.7/" },
19+
{ "version": "0.5.6", "url": "https://scikit.bio/docs/0.5.6/" },
20+
{ "version": "0.5.5", "url": "https://scikit.bio/docs/0.5.5/" },
21+
{ "version": "0.5.4", "url": "https://scikit.bio/docs/0.5.4/" },
22+
{ "version": "0.5.3", "url": "https://scikit.bio/docs/0.5.3/" },
23+
{ "version": "0.5.2", "url": "https://scikit.bio/docs/0.5.2/" },
24+
{ "version": "0.5.1", "url": "https://scikit.bio/docs/0.5.1/" },
25+
{ "version": "0.5.0", "url": "https://scikit.bio/docs/0.5.0/" },
26+
{ "version": "0.4.2", "url": "https://scikit.bio/docs/0.4.2/" },
27+
{ "version": "0.4.1", "url": "https://scikit.bio/docs/0.4.1/" },
28+
{ "version": "0.4.0", "url": "https://scikit.bio/docs/0.4.0/" },
29+
{ "version": "0.4.0", "url": "https://scikit.bio/docs/0.4.0/" },
30+
{ "version": "0.4.0", "url": "https://scikit.bio/docs/0.4.0/" },
31+
{ "version": "0.2.3", "url": "https://scikit.bio/docs/0.2.3/" },
32+
{ "version": "0.2.2", "url": "https://scikit.bio/docs/0.2.2/" },
33+
{ "version": "0.2.1", "url": "https://scikit.bio/docs/0.2.1/" },
34+
{ "version": "0.2.0", "url": "https://scikit.bio/docs/0.2.0/" },
35+
{ "version": "0.1.4", "url": "https://scikit.bio/docs/0.1.4/" },
36+
{ "version": "0.1.3", "url": "https://scikit.bio/docs/0.1.3/" },
37+
{ "version": "0.1.1", "url": "https://scikit.bio/docs/0.1.1/" }
3838
]

0 commit comments

Comments
 (0)