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‎docs/dev/_sources/generated/skbio.util.classonlymethod.rst.txt‎

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‎docs/dev/alignment.html‎

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<meta content="Computing and manipulating biological sequence alignments." name="description" />
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‎docs/dev/generated/skbio.alignment.AlignPath.from_aligned.html‎

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<em class="property"><span class="k"><span class="pre">classmethod</span></span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">AlignPath.</span></span><span class="sig-name descname"><span class="pre">from_aligned</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">aln</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">gap_chars</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'-'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">starts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/scikit-bio/scikit-bio/blob/0.7.1.post1/skbio/alignment/_path.py#L498"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#skbio.alignment.AlignPath.from_aligned" title="Link to this definition">#</a></dt>
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‎docs/dev/generated/skbio.alignment.AlignPath.from_bits.html‎

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<em class="property"><span class="k"><span class="pre">classmethod</span></span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">AlignPath.</span></span><span class="sig-name descname"><span class="pre">from_bits</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">bits</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">starts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/scikit-bio/scikit-bio/blob/0.7.1.post1/skbio/alignment/_path.py#L333"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#skbio.alignment.AlignPath.from_bits" title="Link to this definition">#</a></dt>
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<em class="property"><span class="k"><span class="pre">classmethod</span></span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">AlignPath.</span></span><span class="sig-name descname"><span class="pre">from_bits</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">bits</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">starts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference external" href="https://github.com/scikit-bio/scikit-bio/blob/main/skbio/alignment/_path.py#L333"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#skbio.alignment.AlignPath.from_bits" title="Link to this definition">#</a></dt>
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<dd><p>Create an alignment path from a bit array (0 - character, 1 - gap).</p>
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<dl class="field-list simple">
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<dt class="field-odd">Parameters<span class="colon">:</span></dt>

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