Visium HD Load10X_Spatial error #9685
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Theotheo082
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seems like the error come from the image. I tried the following code and get the same error: Error in type.convert.default(data[[i]], as.is = as.is[i], dec = dec, : Any suggestions would be greatly appreciated. |
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Hi,
I'm new with Visium HD data and i'm struggling when I try to load my data.
I have my directory :
data_dir1 <-"/data12T/DDLPS_Visium/PJ2412414/PJ2412414_250107/spaceranger/LDD_118_HD/outs/binned_outputs/square_008um" but then when i apply the function Load10X_Spatial
LDD_118_HD <- Load10X_Spatial(data.dir = data_dir1)
I obtained this error : Error in type.convert.default(data[[i]], as.is = as.is[i], dec = dec, :
invalid multibyte string at '5ܖj) -15l[��QA=|Gr풿<96>t8k'
Warning: line 1 appears to contain embedded nullsWarning: line 2 appears to contain embedded nullsWarning: line 3 appears to contain embedded nullsWarning: line 4 appears to contain embedded nullsWarning: line 5 appears to contain embedded nullsWarning: EOF within quoted stringWarning: embedded nul(s) found in inputError in type.convert.default(data[[i]], as.is = as.is[i], dec = dec, :
invalid multibyte string at '5ܖj) -15l[��QA=|Gr풿<96>t8k'
Do you know what could be the problem ?
Thank
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