Merge branch 'master' of github.com:rust-bio/rust-htslib

Author: johanneskoester

.github/workflows/rust.yml

@@ -0,0 +1,81 @@
+name: CI
+
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+jobs:
+  Formatting:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v2
+
+      - name: Install stable toolchain
+        uses: actions-rs/toolchain@v1
+        with:
+          toolchain: stable
+          override: true
+          components: rustfmt
+      
+      - name: Check format
+        run: cargo fmt -- --check
+     
+  Linting:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v2
+
+      - name: Checkout submodules
+        uses: textbook/git-checkout-submodule-action@2.0.0
+
+      - name: Install stable toolchain
+        uses: actions-rs/toolchain@v1
+        with:
+          toolchain: stable
+          override: true
+          components: clippy
+
+      - name: Install system dependencies
+        run: |
+            sudo apt-get install --yes zlib1g-dev libbz2-dev musl musl-dev musl-tools
+
+      - name: Lint with clippy
+        uses: actions-rs/clippy-check@v1
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+
+
+  Testing:
+    needs: Formatting
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v2
+
+      - name: Checkout submodules
+        uses: textbook/git-checkout-submodule-action@2.0.0
+
+      - name: Install stable toolchain
+        uses: actions-rs/toolchain@v1
+        with:
+          toolchain: stable
+          override: true
+
+      - name: Install system dependencies
+        run: |
+            sudo apt-get install --yes zlib1g-dev libbz2-dev musl musl-dev musl-tools
+
+      - name: Run cargo-tarpaulin
+        uses: actions-rs/tarpaulin@v0.1
+        with:
+          args: '--out Lcov -- --test-threads 1'
+
+      - name: Upload coverage
+        uses: coverallsapp/github-action@master
+        with:
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+          path-to-lcov: ./lcov.info

.travis.yml

@@ -2,7 +2,7 @@
 [![Crates.io](https://img.shields.io/crates/v/rust-htslib.svg)](https://crates.io/crates/rust-htslib)
 [![Crates.io](https://img.shields.io/crates/l/rust-htslib.svg)](https://crates.io/crates/rust-htslib)
 [![docs.rs](https://docs.rs/rust-htslib/badge.svg)](https://docs.rs/rust-htslib)
-[![Travis](https://img.shields.io/travis/rust-bio/rust-htslib.svg)](https://travis-ci.org/rust-bio/rust-htslib)
+![](https://github.com/rust-bio/rust-htslib/workflows/rust/badge.svg)
 
 # HTSlib bindings for Rust