Cargo formatting

Author: landesfeind

src/faidx/mod.rs

@@ -47,7 +47,7 @@ impl Reader {
     }
 
     /// Create a new Reader from URL.
-		///
+    ///
     /// # Arguments
     ///
     /// * `url` - the url to open
@@ -91,56 +91,57 @@ impl Reader {
     }
 }
 
-
 #[cfg(test)]
 mod tests {
-	use super::*;
-
-	fn open_reader() -> Reader {
-		Reader::from_path(format!("{}/test/test_cram.fa", env!("CARGO_MANIFEST_DIR"))).ok().unwrap()
-	}
-
-	#[test]
-	fn faidx_read_chr_first_base() {
-		let r = open_reader();
-		let seq = r.fetch_seq("chr1", 0 , 0);
-		assert_eq!(seq.len(), 1);
-		assert_eq!(seq, "G");
-	}
-
-	#[test]
-	fn faidx_read_chr_start() {
-		let r = open_reader();
-		let seq = r.fetch_seq("chr1", 0 , 9);
-		assert_eq!(seq.len(), 10);
-		assert_eq!(seq, "GGGCACAGCC");
-	}
-
-	#[test]
-	fn faidx_read_chr_between() {
-		let r = open_reader();
-		let seq = r.fetch_seq("chr1", 4 , 14);
-		assert_eq!(seq.len(), 11);
-		assert_eq!(seq, "ACAGCCTCACC");
-	}
-
-	#[test]
-	fn faidx_read_chr_end() {
-		let r = open_reader();
-		let seq = r.fetch_seq("chr1", 110, 120);
-		assert_eq!(seq.len(), 10);
-		assert_eq!(seq, "CCCCTCCGTG");
-	}
-
-	#[test]
-	fn faidx_read_twice() {
-		let r = open_reader();
-		let seq = r.fetch_seq("chr1", 110, 120);
-		assert_eq!(seq.len(), 10);
-		assert_eq!(seq, "CCCCTCCGTG");
-
-		let seq = r.fetch_seq("chr1", 5, 9);
-		assert_eq!(seq.len(), 5);
-		assert_eq!(seq, "CAGCC");
-	}
+    use super::*;
+
+    fn open_reader() -> Reader {
+        Reader::from_path(format!("{}/test/test_cram.fa", env!("CARGO_MANIFEST_DIR")))
+            .ok()
+            .unwrap()
+    }
+
+    #[test]
+    fn faidx_read_chr_first_base() {
+        let r = open_reader();
+        let seq = r.fetch_seq("chr1", 0, 0);
+        assert_eq!(seq.len(), 1);
+        assert_eq!(seq, "G");
+    }
+
+    #[test]
+    fn faidx_read_chr_start() {
+        let r = open_reader();
+        let seq = r.fetch_seq("chr1", 0, 9);
+        assert_eq!(seq.len(), 10);
+        assert_eq!(seq, "GGGCACAGCC");
+    }
+
+    #[test]
+    fn faidx_read_chr_between() {
+        let r = open_reader();
+        let seq = r.fetch_seq("chr1", 4, 14);
+        assert_eq!(seq.len(), 11);
+        assert_eq!(seq, "ACAGCCTCACC");
+    }
+
+    #[test]
+    fn faidx_read_chr_end() {
+        let r = open_reader();
+        let seq = r.fetch_seq("chr1", 110, 120);
+        assert_eq!(seq.len(), 10);
+        assert_eq!(seq, "CCCCTCCGTG");
+    }
+
+    #[test]
+    fn faidx_read_twice() {
+        let r = open_reader();
+        let seq = r.fetch_seq("chr1", 110, 120);
+        assert_eq!(seq.len(), 10);
+        assert_eq!(seq, "CCCCTCCGTG");
+
+        let seq = r.fetch_seq("chr1", 5, 9);
+        assert_eq!(seq.len(), 5);
+        assert_eq!(seq, "CAGCC");
+    }
 }

src/lib.rs

@@ -91,7 +91,7 @@ extern crate snafu;
 
 pub mod bam;
 pub mod bcf;
+pub mod faidx;
 pub mod htslib;
 pub mod tbx;
-pub mod faidx;
 pub mod utils;