various to address issue #16

Author: rmgpanw

.Rbuildignore

@@ -17,3 +17,4 @@
 ^codemeta\.json$
 ^.devcontainer$
 ^CODE_OF_CONDUCT\.md$
+^revdep$

.github/workflows/pkgcheck.yaml

@@ -11,7 +11,6 @@ on:
   # Run on every push to main
   push:
     branches:
-      - main
       - ropensci-software-review
 
 jobs:

.gitignore

@@ -6,3 +6,4 @@ inst/doc
 .Renviron
 /doc/
 /Meta/
+/revdep/

README.Rmd

@@ -89,14 +89,14 @@ get_significant_single_tissue_eqtls(gencodeId = c(
 
 ## Citing gtexr
 
-If you find gtexr useful, please consider citing both GTEx and gtexr. Citation details are available [here](https://docs.ropensci.org/gtexrauthors.html#citation).
+If you find gtexr useful, please consider citing both GTEx and gtexr. Citation details are available [here](https://docs.ropensci.org/gtexr/authors.html#citation).
 
 Example publications citing gtexr include:
 
-- [Schwartz R, Warwick AN, et al. Genetic Distinctions Between Reticular Pseudodrusen and Drusen: A Genome-Wide Association Study. Am J Ophthalmol. 2025 Mar 8:S0002-9394(25)00119-9. doi: 10.1016/j.ajo.2025.03.007. Epub ahead of print. PMID: 40064387](https://www.ajo.com/article/S0002-9394(25)00119-9/fulltext)
+- [Schwartz R, Warwick AN, et al. Genetic Distinctions Between Reticular Pseudodrusen and Drusen: A Genome-Wide Association Study. Am J Ophthalmol. 2025 Mar 8:S0002-9394(25)00119-9. doi: 10.1016/j.ajo.2025.03.007. Epub ahead of print. PMID: 40064387](https://pubmed.ncbi.nlm.nih.gov/40064387/)
 
 ## Community guidelines
 
-Feedback, bug reports, and feature requests are welcome; file issues or seek support [here](https://github.com/ropensci/gtexr/issues). If you would like to contribute to the package, please see our [contributing guidelines](https://docs.ropensci.org/gtexrCONTRIBUTING.html).
+Feedback, bug reports, and feature requests are welcome; file issues or seek support [here](https://github.com/ropensci/gtexr/issues). If you would like to contribute to the package, please see our [contributing guidelines](https://docs.ropensci.org/gtexr/CONTRIBUTING.html).
 
 Please note that this package is released with a [Contributor Code of Conduct](https://ropensci.org/code-of-conduct/). By contributing to this project, you agree to abide by its terms.

README.md

@@ -173,22 +173,22 @@ get_significant_single_tissue_eqtls(gencodeId = c(
 
 If you find gtexr useful, please consider citing both GTEx and gtexr.
 Citation details are available
-[here](https://docs.ropensci.org/gtexrauthors.html#citation).
+[here](https://docs.ropensci.org/gtexr/authors.html#citation).
 
 Example publications citing gtexr include:
 
 - [Schwartz R, Warwick AN, et al. Genetic Distinctions Between Reticular
   Pseudodrusen and Drusen: A Genome-Wide Association Study. Am J
   Ophthalmol. 2025 Mar 8:S0002-9394(25)00119-9. doi:
   10.1016/j.ajo.2025.03.007. Epub ahead of print. PMID:
-  40064387](https://www.ajo.com/article/S0002-9394(25)00119-9/fulltext)
+  40064387](https://pubmed.ncbi.nlm.nih.gov/40064387/)
 
 ## Community guidelines
 
 Feedback, bug reports, and feature requests are welcome; file issues or
 seek support [here](https://github.com/ropensci/gtexr/issues). If you
 would like to contribute to the package, please see our [contributing
-guidelines](https://docs.ropensci.org/gtexrCONTRIBUTING.html).
+guidelines](https://docs.ropensci.org/gtexr/CONTRIBUTING.html).
 
 Please note that this package is released with a [Contributor Code of
 Conduct](https://ropensci.org/code-of-conduct/). By contributing to this

cran-comments.md

@@ -1,5 +1,3 @@
 ## R CMD check results
 
-0 errors | 0 warnings | 1 note
-
-* This is a new release.
+0 errors | 0 warnings | 0 notes