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README.Rmd

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<a href="https://CRAN.R-project.org/package=UCSCXenaTools"><img src="http://cranlogs.r-pkg.org/badges/grand-total/UCSCXenaTools" alt="downloads"></a>
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<a href="https://zenodo.org/badge/latestdoi/178662770"><img src="https://zenodo.org/badge/178662770.svg" alt="DOI"></a>
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[![Closed issues](https://img.shields.io/github/issues-closed/ropensci/UCSCXenaTools.svg)](https://github.com/ropensci/UCSCXenaTools/issues?q=is%3Aissue+is%3Aclosed)

README.md

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<a href="https://zenodo.org/badge/latestdoi/178662770"><img src="https://zenodo.org/badge/178662770.svg" alt="DOI"></a>
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library(UCSCXenaTools)
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#> =========================================================================
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#> UCSCXenaTools version 1.2.5
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#> Github page: https://github.com/ShixiangWang/UCSCXenaTools
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#> Documentation: https://shixiangwang.github.io/UCSCXenaTools/
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#> Project URL: https://github.com/ropensci/UCSCXenaTools
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#> Usages: https://shixiangwang.github.io/home/en/tools/#ucscxenatools
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#>
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#> If you use it in published research, please cite:
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#> Wang, Shixiang, et al. "The predictive power of tumor mutational burden
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XenaQuery(df_todo) %>%
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XenaDownload() -> xe_download
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#> This will check url status, please be patient.
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#> All downloaded files will under directory /var/folders/mx/rfkl27z90c96wbmn3_kjk8c80000gn/T//RtmpZd3EwE.
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#> All downloaded files will under directory /var/folders/mx/rfkl27z90c96wbmn3_kjk8c80000gn/T//Rtmp8CSlqo.
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#> The 'trans_slash' option is FALSE, keep same directory structure as Xena.
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#> Creating directories for datasets...
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#> Downloading TCGA.LUAD.sampleMap/LUAD_clinicalMatrix.gz

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