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lines changed Original file line number Diff line number Diff line change @@ -71,7 +71,7 @@ Development
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<a href =" https://CRAN.R-project.org/package=UCSCXenaTools " ><img src =" http://cranlogs.r-pkg.org/badges/grand-total/UCSCXenaTools " alt =" downloads " ></a >
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+ < a href = " https://zenodo.org/badge/latestdoi/178662770 " >< img src = " https://zenodo.org/badge/178662770.svg " alt = " DOI " ></ a >
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[ ![ Closed issues] ( https://img.shields.io/github/issues-closed/ropensci/UCSCXenaTools.svg )] ( https://github.com/ropensci/UCSCXenaTools/issues?q=is%3Aissue+is%3Aclosed )
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+ <a href =" https://zenodo.org/badge/latestdoi/178662770 " ><img src =" https://zenodo.org/badge/178662770.svg " alt =" DOI " ></a >
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@@ -243,8 +245,8 @@ You can load `XenaData` after loading `UCSCXenaTools` into R.
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library(UCSCXenaTools )
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# > =========================================================================
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# > UCSCXenaTools version 1.2.5
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- # > Github page : https://github.com/ShixiangWang /UCSCXenaTools
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- # > Documentation : https://shixiangwang.github.io/UCSCXenaTools/
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+ # > Project URL : https://github.com/ropensci /UCSCXenaTools
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+ # > Usages : https://shixiangwang.github.io/home/en/tools/#ucscxenatools
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# >
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# > If you use it in published research, please cite:
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# > Wang, Shixiang, et al. "The predictive power of tumor mutational burden
@@ -300,7 +302,7 @@ Query and download.
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XenaQuery(df_todo ) %> %
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XenaDownload() - > xe_download
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# > This will check url status, please be patient.
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- # > All downloaded files will under directory /var/folders/mx/rfkl27z90c96wbmn3_kjk8c80000gn/T//RtmpZd3EwE .
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+ # > All downloaded files will under directory /var/folders/mx/rfkl27z90c96wbmn3_kjk8c80000gn/T//Rtmp8CSlqo .
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# > The 'trans_slash' option is FALSE, keep same directory structure as Xena.
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# > Creating directories for datasets...
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# > Downloading TCGA.LUAD.sampleMap/LUAD_clinicalMatrix.gz
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