satc_dump output missing anchors #39
Description
I have three filter conditions on the anchor results file (all have min effect size 0.9; then the min number of nonzero samples is 250, 50 or 20), with which I made 3 different anchor.txt files for satc dump.
FilterSet_1: 7,201 anchors
FilterSet_2: 263,556 anchors
FilterSet_3: 1,076,797 anchors
The satc_dump outputs for FilterSet_3 are missing many anchors (e.g., the anchors file has 65 anchors mapping to a particular gene, and only one of those 65 appears in the satc_dump output). The number of lines in the output files also doesn't scale as expected with the number of anchors and are as follows:
FilterSet_1: 87,078 lines in satc_dump output
FilterSet_2: 362,678 lines in satc_dump output
FilterSet_3: 597,094 lines in satc_dump output